Literature DB >> 25838518

Estimating diffusion propagator and its moments using directional radial basis functions.

Lipeng Ning, Carl-Fredrik Westin, Yogesh Rathi.   

Abstract

The ensemble average diffusion propagator (EAP) obtained from diffusion MRI (dMRI) data captures important structural properties of the underlying tissue. As such, it is imperative to derive an accurate estimate of the EAP from the acquired diffusion data. In this work, we propose a novel method for estimating the EAP by representing the diffusion signal as a linear combination of directional radial basis functions scattered in q-space. In particular, we focus on a special case of anisotropic Gaussian basis functions and derive analytical expressions for the diffusion orientation distribution function (ODF), the return-to-origin probability (RTOP), and mean-squared-displacement (MSD). A significant advantage of the proposed method is that the second and the fourth order moment tensors of the EAP can be computed explicitly. This allows for computing several novel scalar indices (from the moment tensors) such as mean-fourth-order-displacement (MFD) and generalized kurtosis (GK)-which is a generalization of the mean kurtosis measure used in diffusion kurtosis imaging. Additionally, we also propose novel scalar indices computed from the signal in q-space, called the q-space mean-squared-displacement (QMSD) and the q-space mean-fourth-order-displacement (QMFD), which are sensitive to short diffusion time scales. We validate our method extensively on data obtained from a physical phantom with known crossing angle as well as on in-vivo human brain data. Our experiments demonstrate the robustness of our method for different combinations of b-values and number of gradient directions.

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Year:  2015        PMID: 25838518      PMCID: PMC4591254          DOI: 10.1109/TMI.2015.2418674

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  32 in total

1.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity.

Authors:  David S Tuch; Timothy G Reese; Mette R Wiegell; Nikos Makris; John W Belliveau; Van J Wedeen
Journal:  Magn Reson Med       Date:  2002-10       Impact factor: 4.668

2.  A unified computational framework for deconvolution to reconstruct multiple fibers from diffusion weighted MRI.

Authors:  Bing Jian; Baba C Vemuri
Journal:  IEEE Trans Med Imaging       Date:  2007-11       Impact factor: 10.048

3.  Hybrid diffusion imaging.

Authors:  Yu-Chien Wu; Andrew L Alexander
Journal:  Neuroimage       Date:  2007-03-24       Impact factor: 6.556

4.  Efficient computation of PDF-based characteristics from diffusion MR signal.

Authors:  Haz-Edine Assemlal; David Tschumperlé; Luc Brun
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

5.  Computation of diffusion function measures in q-space using magnetic resonance hybrid diffusion imaging.

Authors:  Yu-Chien Wu; Aaron S Field; Andrew L Alexander
Journal:  IEEE Trans Med Imaging       Date:  2008-06       Impact factor: 10.048

6.  Efficient and robust computation of PDF features from diffusion MR signal.

Authors:  Haz-Edine Assemlal; David Tschumperlé; Luc Brun
Journal:  Med Image Anal       Date:  2009-07-12       Impact factor: 8.545

Review 7.  High b-value q-space analyzed diffusion-weighted MRS and MRI in neuronal tissues - a technical review.

Authors:  Yoram Cohen; Yaniv Assaf
Journal:  NMR Biomed       Date:  2002 Nov-Dec       Impact factor: 4.044

8.  Three learning phases for radial-basis-function networks.

Authors:  F Schwenker; H A Kestler; G Palm
Journal:  Neural Netw       Date:  2001-05

9.  The effect of the diffusion time and pulse gradient duration ratio on the diffraction pattern and the structural information estimated from q-space diffusion MR: experiments and simulations.

Authors:  Amnon Bar-Shir; Liat Avram; Evren Ozarslan; Peter J Basser; Yoram Cohen
Journal:  J Magn Reson       Date:  2008-07-15       Impact factor: 2.229

10.  On approximation of orientation distributions by means of spherical ridgelets.

Authors:  Oleg Michailovich; Yogesh Rathi
Journal:  IEEE Trans Image Process       Date:  2009-11-03       Impact factor: 10.856

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  17 in total

1.  MK-curve - Characterizing the relation between mean kurtosis and alterations in the diffusion MRI signal.

Authors:  Fan Zhang; Lipeng Ning; Lauren J O'Donnell; Ofer Pasternak
Journal:  Neuroimage       Date:  2019-04-10       Impact factor: 6.556

2.  A theoretical signal processing framework for linear diffusion MRI: Implications for parameter estimation and experiment design.

Authors:  Divya Varadarajan; Justin P Haldar
Journal:  Neuroimage       Date:  2017-08-19       Impact factor: 6.556

3.  Precise Inference and Characterization of Structural Organization (PICASO) of tissue from molecular diffusion.

Authors:  Lipeng Ning; Evren Özarslan; Carl-Fredrik Westin; Yogesh Rathi
Journal:  Neuroimage       Date:  2016-10-14       Impact factor: 6.556

4.  New insights about time-varying diffusivity and its estimation from diffusion MRI.

Authors:  Lipeng Ning; Kawin Setsompop; Carl-Fredrik Westin; Yogesh Rathi
Journal:  Magn Reson Med       Date:  2016-09-09       Impact factor: 4.668

5.  Suprathreshold fiber cluster statistics: Leveraging white matter geometry to enhance tractography statistical analysis.

Authors:  Fan Zhang; Weining Wu; Lipeng Ning; Gloria McAnulty; Deborah Waber; Borjan Gagoski; Kiera Sarill; Hesham M Hamoda; Yang Song; Weidong Cai; Yogesh Rathi; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2018-01-11       Impact factor: 6.556

6.  Sparse Reconstruction Challenge for diffusion MRI: Validation on a physical phantom to determine which acquisition scheme and analysis method to use?

Authors:  Lipeng Ning; Frederik Laun; Yaniv Gur; Edward V R DiBella; Samuel Deslauriers-Gauthier; Thinhinane Megherbi; Aurobrata Ghosh; Mauro Zucchelli; Gloria Menegaz; Rutger Fick; Samuel St-Jean; Michael Paquette; Ramon Aranda; Maxime Descoteaux; Rachid Deriche; Lauren O'Donnell; Yogesh Rathi
Journal:  Med Image Anal       Date:  2015-11-10       Impact factor: 8.545

Review 7.  Exploring early human brain development with structural and physiological neuroimaging.

Authors:  Lana Vasung; Esra Abaci Turk; Silvina L Ferradal; Jason Sutin; Jeffrey N Stout; Banu Ahtam; Pei-Yi Lin; P Ellen Grant
Journal:  Neuroimage       Date:  2018-07-21       Impact factor: 6.556

8.  Quantifying Genetic and Environmental Influence on Gray Matter Microstructure Using Diffusion MRI.

Authors:  Madhura Baxi; Maria A Di Biase; Amanda E Lyall; Suheyla Cetin-Karayumak; Johanna Seitz; Lipeng Ning; Nikos Makris; Douglas Rosene; Marek Kubicki; Yogesh Rathi
Journal:  Cereb Cortex       Date:  2020-11-03       Impact factor: 5.357

9.  Apparent propagator anisotropy from single-shell diffusion MRI acquisitions.

Authors:  Santiago Aja-Fernández; Antonio Tristán-Vega; Derek K Jones
Journal:  Magn Reson Med       Date:  2020-12-13       Impact factor: 3.737

10.  Retrospective harmonization of multi-site diffusion MRI data acquired with different acquisition parameters.

Authors:  Suheyla Cetin Karayumak; Sylvain Bouix; Lipeng Ning; Anthony James; Tim Crow; Martha Shenton; Marek Kubicki; Yogesh Rathi
Journal:  Neuroimage       Date:  2018-09-08       Impact factor: 7.400

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