Literature DB >> 25833254

Channel function reconstitution and re-animation: a single-channel strategy in the postcrystal age.

Shigetoshi Oiki1.   

Abstract

The most essential properties of ion channels for their physiologically relevant functions are ion-selective permeation and gating. Among the channel species, the potassium channel is primordial and the most ubiquitous in the biological world, and knowledge of this channel underlies the understanding of features of other ion channels. The strategy applied to studying channels changed dramatically after the crystal structure of the potassium channel was resolved. Given the abundant structural information available, we exploited the bacterial KcsA potassium channel as a simple model channel. In the postcrystal age, there are two effective frameworks with which to decipher the functional codes present in the channel structure, namely reconstitution and re-animation. Complex channel proteins are decomposed into essential functional components, and well-examined parts are rebuilt for integrating channel function in the membrane (reconstitution). Permeation and gating are dynamic operations, and one imagines the active channel by breathing life into the 'frozen' crystal (re-animation). Capturing the motion of channels at the single-molecule level is necessary to characterize the behaviour of functioning channels. Advanced techniques, including diffracted X-ray tracking, lipid bilayer methods and high-speed atomic force microscopy, have been used. Here, I present dynamic pictures of the KcsA potassium channel from the submolecular conformational changes to the supramolecular collective behaviour of channels in the membrane. These results form an integrated picture of the active channel and offer insights into the processes underlying the physiological function of the channel in the cell membrane.
© 2015 The Authors. The Journal of Physiology © 2015 The Physiological Society.

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Year:  2015        PMID: 25833254      PMCID: PMC4500343          DOI: 10.1113/JP270025

Source DB:  PubMed          Journal:  J Physiol        ISSN: 0022-3751            Impact factor:   5.182


  90 in total

1.  The cavity and pore helices in the KcsA K+ channel: electrostatic stabilization of monovalent cations.

Authors:  B Roux; R MacKinnon
Journal:  Science       Date:  1999-07-02       Impact factor: 47.728

2.  Energetic optimization of ion conduction rate by the K+ selectivity filter.

Authors:  J H Morais-Cabral; Y Zhou; R MacKinnon
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

3.  Mechanism of voltage gating in potassium channels.

Authors:  Morten Ø Jensen; Vishwanath Jogini; David W Borhani; Abba E Leffler; Ron O Dror; David E Shaw
Journal:  Science       Date:  2012-04-13       Impact factor: 47.728

4.  ATR-FTIR Spectroscopy Revealing the Different Vibrational Modes of the Selectivity Filter Interacting with K(+) and Na(+) in the Open and Collapsed Conformations of the KcsA Potassium Channel.

Authors:  Yuji Furutani; Hirofumi Shimizu; Yusuke Asai; Tetsuya Fukuda; Shigetoshi Oiki; Hideki Kandori
Journal:  J Phys Chem Lett       Date:  2012-12-10       Impact factor: 6.475

5.  Global twisting motion of single molecular KcsA potassium channel upon gating.

Authors:  Hirofumi Shimizu; Masayuki Iwamoto; Takashi Konno; Amiko Nihei; Yuji C Sasaki; Shigetoshi Oiki
Journal:  Cell       Date:  2008-01-11       Impact factor: 41.582

6.  Potassium channels as multi-ion single-file pores.

Authors:  B Hille; W Schwarz
Journal:  J Gen Physiol       Date:  1978-10       Impact factor: 4.086

7.  Decomposition of slide helix contributions to ATP-dependent inhibition of Kir6.2 channels.

Authors:  Jenny B W Li; Xinyang Huang; Roger S Zhang; Robin Y Kim; Runying Yang; Harley T Kurata
Journal:  J Biol Chem       Date:  2013-06-24       Impact factor: 5.157

Review 8.  Lipid modulation of ion channels through specific binding sites.

Authors:  J A Poveda; A M Giudici; M L Renart; M L Molina; E Montoya; A Fernández-Carvajal; G Fernández-Ballester; J A Encinar; J M González-Ros
Journal:  Biochim Biophys Acta       Date:  2013-11-08

9.  Coupling between voltage sensor activation, Ca2+ binding and channel opening in large conductance (BK) potassium channels.

Authors:  Frank T Horrigan; Richard W Aldrich
Journal:  J Gen Physiol       Date:  2002-09       Impact factor: 4.086

10.  Shaker potassium channel gating. III: Evaluation of kinetic models for activation.

Authors:  W N Zagotta; T Hoshi; R W Aldrich
Journal:  J Gen Physiol       Date:  1994-02       Impact factor: 4.086

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  9 in total

1.  Constitutive boost of a K+ channel via inherent bilayer tension and a unique tension-dependent modality.

Authors:  Masayuki Iwamoto; Shigetoshi Oiki
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-03       Impact factor: 11.205

2.  NIPS-JP symposium: cutting-edge approaches towards the functioning mechanisms of membrane proteins.

Authors:  Yoshihiro Kubo; Yasushi Okamura
Journal:  J Physiol       Date:  2015-06-15       Impact factor: 5.182

3.  Characterization of the structure of lipodisq nanoparticles in the presence of KCNE1 by dynamic light scattering and transmission electron microscopy.

Authors:  Rongfu Zhang; Indra D Sahu; Avnika P Bali; Carole Dabney-Smith; Gary A Lorigan
Journal:  Chem Phys Lipids       Date:  2016-12-09       Impact factor: 3.329

4.  Specific interactions between alkali metal cations and the KcsA channel studied using ATR-FTIR spectroscopy.

Authors:  Yuji Furutani; Hirofumi Shimizu; Yusuke Asai; Shigetoshi Oiki; Hideki Kandori
Journal:  Biophys Physicobiol       Date:  2015-09-12

Review 5.  Physical and Chemical Interplay Between the Membrane and a Prototypical Potassium Channel Reconstituted on a Lipid Bilayer Platform.

Authors:  Masayuki Iwamoto; Shigetoshi Oiki
Journal:  Front Mol Neurosci       Date:  2021-02-26       Impact factor: 5.639

6.  Applicability of Styrene-Maleic Acid Copolymer for Two Microbial Rhodopsins, RxR and HsSRI.

Authors:  Tetsuya Ueta; Keiichi Kojima; Tomoya Hino; Mikihiro Shibata; Shingo Nagano; Yuki Sudo
Journal:  Biophys J       Date:  2020-09-29       Impact factor: 4.033

7.  Mechanism for attenuated outward conductance induced by mutations in the cytoplasmic pore of Kir2.1 channels.

Authors:  Hsueh-Kai Chang; Masayuki Iwamoto; Shigetoshi Oiki; Ru-Chi Shieh
Journal:  Sci Rep       Date:  2015-12-18       Impact factor: 4.379

Review 8.  The styrene-maleic acid copolymer: a versatile tool in membrane research.

Authors:  Jonas M Dörr; Stefan Scheidelaar; Martijn C Koorengevel; Juan J Dominguez; Marre Schäfer; Cornelis A van Walree; J Antoinette Killian
Journal:  Eur Biophys J       Date:  2015-12-06       Impact factor: 1.733

9.  Membrane Perfusion of Hydrophobic Substances Around Channels Embedded in the Contact Bubble Bilayer.

Authors:  Masayuki Iwamoto; Shigetoshi Oiki
Journal:  Sci Rep       Date:  2017-07-31       Impact factor: 4.379

  9 in total

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