Literature DB >> 2582959

Statistical evaluation of cell kinetic data from DNA flow cytometry (FCM) by the EM algorithm.

B Baldetorp1, M Dalberg, U Holst, G Lindgren.   

Abstract

Flow cytometric DNA measurements yield the amount of DNA for each of a large number of cells. A DNA histogram normally consists of a mixture of one or more constellations of G0/G1-, S-, G2/M-phase cells, together with internal standards, debris, background noise, and one or more populations of clumped cells. We have modelled typical DNA histograms as a mixed distribution with Gaussian densities for the G0/G1 and G2/M phases, an S-phase density, assumed to be uniform between the G0/G1 and G2/M peaks, observed with a Gaussian error, and with Gaussian densities for standards of chicken and trout red blood cells. The debris is modelled as a truncated exponential distribution, and we also have included a uniform background noise distribution over the whole observation interval. We have explored a new approach for maximum-likelihood analyses of complex DNA histograms by the application of the EM algorithm. This algorithm was used for four observed DNA histograms of varying complexity. Our results show that the algorithm works very well, and it converges to reasonable values for all parameters. In simulations from the estimated models, we have investigated bias, variance, and correlations of the estimates.

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Year:  1989        PMID: 2582959     DOI: 10.1002/cyto.990100605

Source DB:  PubMed          Journal:  Cytometry        ISSN: 0196-4763


  15 in total

1.  Analysis of radiation-induced changes to human melanoma cultures using a mathematical model.

Authors:  B Basse; W R Joseph; E S Marshall; B C Baguley
Journal:  Cell Prolif       Date:  2010-04       Impact factor: 6.831

2.  Prognostic potential of flow cytometric S-phase and ploidy prospectively determined in primary breast carcinomas.

Authors:  S B Ewers; R Attewell; B Baldetorp; A Borg; E Långström; D Killander
Journal:  Breast Cancer Res Treat       Date:  1992-01       Impact factor: 4.872

3.  Recurrence-free survival in breast cancer improved by adjuvant tamoxifen--especially for progesterone receptor positive tumors with a high proliferation.

Authors:  M Fernö; B Baldetorp; P O Bendahl; A Borg; S B Ewers; H Olsson; S Rydén; H Sigurdsson; D Killander
Journal:  Breast Cancer Res Treat       Date:  1995       Impact factor: 4.872

4.  Prognostic significance of flow cytometric DNA analysis and estrogen receptor content in breast carcinomas--a 10 year survival study.

Authors:  S B Ewers; R Attewell; B Baldetorp; A Borg; M Fernö; E Långström; D Killander
Journal:  Breast Cancer Res Treat       Date:  1992       Impact factor: 4.872

5.  Regulation of ornithine decarboxylase during cell growth. Changes in the stability and translatability of the mRNA, and in the turnover of the protein.

Authors:  U M Wallon; L Persson; O Heby
Journal:  Mol Cell Biochem       Date:  1995-05-10       Impact factor: 3.396

6.  Landscape of somatic allelic imbalances and copy number alterations in HER2-amplified breast cancer.

Authors:  Johan Staaf; Göran Jönsson; Markus Ringnér; Bo Baldetorp; Ake Borg
Journal:  Breast Cancer Res       Date:  2011-12-14       Impact factor: 6.466

7.  Comparison of cisplatin sensitivity and the 18F fluoro-2-deoxy 2 glucose uptake with proliferation parameters and gene expression in squamous cell carcinoma cell lines of the head and neck.

Authors:  Eva Henriksson; Elisabeth Kjellén; Bo Baldetorp; Pär-Ola Bendahl; Ake Borg; Eva Brun; Fredrik Mertens; Tomas Ohlsson; Karin Rennstam; Johan Wennerberg; Peter Wahlberg
Journal:  J Exp Clin Cancer Res       Date:  2009-02-13

8.  Flow cytometric S-phase fraction in soft-tissue sarcoma: prognostic importance analysed in 160 patients.

Authors:  P Gustafson; M Fernö; M Akerman; B Baldetorp; H Willén; D Killander; A Rydholm
Journal:  Br J Cancer       Date:  1997       Impact factor: 7.640

9.  Complex karyotypes in flow cytometrically DNA-diploid squamous cell carcinomas of the head and neck.

Authors:  J Akervall; Y Jin; B Baldetorp; F Mertens; J Wennerberg
Journal:  Br J Cancer       Date:  1998-04       Impact factor: 7.640

10.  Survival in endometrial cancer in relation to minimally invasive surgery or open surgery - a Swedish Gynecologic Cancer Group (SweGCG) study.

Authors:  Christer Borgfeldt; Erik Holmberg; Janusz Marcickiewicz; Karin Stålberg; Bengt Tholander; Elisabeth Åvall Lundqvist; Angelique Flöter-Rådestad; Maria Bjurberg; Pernilla Dahm-Kähler; Kristina Hellman; Elisabet Hjerpe; Preben Kjölhede; Per Rosenberg; Thomas Högberg
Journal:  BMC Cancer       Date:  2021-06-02       Impact factor: 4.430

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