Literature DB >> 25829440

Arabidopsis BIRD Zinc Finger Proteins Jointly Stabilize Tissue Boundaries by Confining the Cell Fate Regulator SHORT-ROOT and Contributing to Fate Specification.

Yuchen Long1, Wouter Smet1, Alfredo Cruz-Ramírez2, Bas Castelijns2, Wim de Jonge2, Ari Pekka Mähönen3, Benjamin P Bouchet4, Gabino Sanchez Perez5, Anna Akhmanova4, Ben Scheres1, Ikram Blilou6.   

Abstract

Plant cells cannot rearrange their positions; therefore, sharp tissue boundaries must be accurately programmed. Movement of the cell fate regulator SHORT-ROOT from the stele to the ground tissue has been associated with transferring positional information across tissue boundaries. The zinc finger BIRD protein JACKDAW has been shown to constrain SHORT-ROOT movement to a single layer, and other BIRD family proteins were postulated to counteract JACKDAW's role in restricting SHORT-ROOT action range. Here, we report that regulation of SHORT-ROOT movement requires additional BIRD proteins whose action is critical for the establishment and maintenance of the boundary between stele and ground tissue. We show that BIRD proteins act in concert and not in opposition. The exploitation of asymmetric redundancies allows the separation of two BIRD functions: constraining SHORT-ROOT spread through nuclear retention and transcriptional regulation of key downstream SHORT-ROOT targets, including SCARECROW and CYCLIND6. Our data indicate that BIRD proteins promote formative divisions and tissue specification in the Arabidopsis thaliana root meristem ground tissue by tethering and regulating transcriptional competence of SHORT-ROOT complexes. As a result, a tissue boundary is not "locked in" after initial patterning like in many animal systems, but possesses considerable developmental plasticity due to continuous reliance on mobile transcription factors.
© 2015 American Society of Plant Biologists. All rights reserved.

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Year:  2015        PMID: 25829440      PMCID: PMC4558684          DOI: 10.1105/tpc.114.132407

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  52 in total

1.  The maize ID1 flowering time regulator is a zinc finger protein with novel DNA binding properties.

Authors:  Akiko Kozaki; Sarah Hake; Joseph Colasanti
Journal:  Nucleic Acids Res       Date:  2004-03-12       Impact factor: 16.971

2.  An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants.

Authors:  Hongchang Cui; Mitchell P Levesque; Teva Vernoux; Jee W Jung; Alice J Paquette; Kimberly L Gallagher; Jean Y Wang; Ikram Blilou; Ben Scheres; Philip N Benfey
Journal:  Science       Date:  2007-04-20       Impact factor: 47.728

3.  The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling.

Authors:  Y Helariutta; H Fukaki; J Wysocka-Diller; K Nakajima; J Jung; G Sena; M T Hauser; P N Benfey
Journal:  Cell       Date:  2000-05-26       Impact factor: 41.582

4.  WEREWOLF, a MYB-related protein in Arabidopsis, is a position-dependent regulator of epidermal cell patterning.

Authors:  M M Lee; J Schiefelbein
Journal:  Cell       Date:  1999-11-24       Impact factor: 41.582

5.  Intercellular movement of the putative transcription factor SHR in root patterning.

Authors:  K Nakajima; G Sena; T Nawy; P N Benfey
Journal:  Nature       Date:  2001-09-20       Impact factor: 49.962

6.  A novel two-component hybrid molecule regulates vascular morphogenesis of the Arabidopsis root.

Authors:  A P Mähönen; M Bonke; L Kauppinen; M Riikonen; P N Benfey; Y Helariutta
Journal:  Genes Dev       Date:  2000-12-01       Impact factor: 11.361

7.  A broad competence to respond to SHORT ROOT revealed by tissue-specific ectopic expression.

Authors:  Giovanni Sena; Jee W Jung; Philip N Benfey
Journal:  Development       Date:  2004-05-13       Impact factor: 6.868

8.  APL regulates vascular tissue identity in Arabidopsis.

Authors:  Martin Bonke; Siripong Thitamadee; Ari Pekka Mähönen; Marie-Theres Hauser; Ykä Helariutta
Journal:  Nature       Date:  2003-11-13       Impact factor: 49.962

9.  Developmental regulation and significance of KNOX protein trafficking in Arabidopsis.

Authors:  Jae-Yean Kim; Zhuang Yuan; David Jackson
Journal:  Development       Date:  2003-09       Impact factor: 6.868

10.  The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants.

Authors:  Joseph Colasanti; Reynald Tremblay; Ada Y M Wong; Viktoriya Coneva; Akiko Kozaki; Barbara K Mable
Journal:  BMC Genomics       Date:  2006-06-19       Impact factor: 3.969

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  45 in total

1.  Auxin response cell-autonomously controls ground tissue initiation in the early Arabidopsis embryo.

Authors:  Barbara K Möller; Colette A Ten Hove; Daoquan Xiang; Nerys Williams; Lorena González López; Saiko Yoshida; Margot Smit; Raju Datla; Dolf Weijers
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

2.  Elongator Is Required for Root Stem Cell Maintenance by Regulating SHORTROOT Transcription.

Authors:  Linlin Qi; Xiaoyue Zhang; Huawei Zhai; Jian Liu; Fangming Wu; Chuanyou Li; Qian Chen
Journal:  Plant Physiol       Date:  2018-11-06       Impact factor: 8.340

Review 3.  Phosphorylation regulates the activity of INDETERMINATE-DOMAIN (IDD/BIRD) proteins in response to diverse environmental conditions.

Authors:  Ronny Völz; Naganand Rayapuram; Heribert Hirt
Journal:  Plant Signal Behav       Date:  2019-07-17

4.  In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.

Authors:  Yuchen Long; Yvonne Stahl; Stefanie Weidtkamp-Peters; Marten Postma; Wenkun Zhou; Joachim Goedhart; María-Isabel Sánchez-Pérez; Theodorus W J Gadella; Rüdiger Simon; Ben Scheres; Ikram Blilou
Journal:  Nature       Date:  2017-07-26       Impact factor: 49.962

Review 5.  Regulation of Division and Differentiation of Plant Stem Cells.

Authors:  Edith Pierre-Jerome; Colleen Drapek; Philip N Benfey
Journal:  Annu Rev Cell Dev Biol       Date:  2018-08-22       Impact factor: 13.827

6.  Histone Deacetylase HDA19 Affects Root Cortical Cell Fate by Interacting with SCARECROW.

Authors:  Wen-Qian Chen; Colleen Drapek; Dong-Xu Li; Zhi-Hong Xu; Philip N Benfey; Shu-Nong Bai
Journal:  Plant Physiol       Date:  2019-02-08       Impact factor: 8.340

7.  NKD Transcription Factors Are Central Regulators of Maize Endosperm Development.

Authors:  Bryan C Gontarek; Anjanasree K Neelakandan; Hao Wu; Philip W Becraft
Journal:  Plant Cell       Date:  2016-11-28       Impact factor: 11.277

8.  Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD.

Authors:  Yoshinori Hirano; Masahiro Nakagawa; Tomoe Suyama; Kohji Murase; Maya Shirakawa; Seiji Takayama; Tai-Ping Sun; Toshio Hakoshima
Journal:  Nat Plants       Date:  2017-02-17       Impact factor: 15.793

9.  Step by step evolution of Indeterminate Domain (IDD) transcriptional regulators: from algae to angiosperms.

Authors:  Santiago Prochetto; Renata Reinheimer
Journal:  Ann Bot       Date:  2020-06-19       Impact factor: 4.357

10.  Transcriptional control of tissue formation throughout root development.

Authors:  Miguel A Moreno-Risueno; Rosangela Sozzani; Galip Gürkan Yardımcı; Jalean J Petricka; Teva Vernoux; Ikram Blilou; Jose Alonso; Cara M Winter; Uwe Ohler; Ben Scheres; Philip N Benfey
Journal:  Science       Date:  2015-10-23       Impact factor: 47.728

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