Literature DB >> 25828368

Development and validation of a new STR 25-plex typing system.

Suhua Zhang1, Yingnan Bian2, Huaizhou Tian3, Zheng Wang2, Zhen Hu4, Chengtao Li5.   

Abstract

In this study, a new STR 25-plex typing system, including 23 autosomal STRs (D1S1656, D2S1338, D2S441, D3S1358, D5S818, D6S1043, D7S820, D8S1179, D10S1248, D12S391, D13S317, D16S539, D18S51, D19S433, D21S11, D22S1045, CSF1PO, FGA, Penta D, Penta E, TH01, TPOX, vWA) and a Y-STR locus of DYS391 and amelogenin, was developed. The included 24 STRs belonged to the main international DNA databases (CODIS, ISSL, ESS-extended, UCL, GCL and NCIDD) except D6S1043 (specially chosen for Chinese population). Developmental validation indicated that the STR 25-plex typing system was reproducible, accurate, sensitive and robust. The sensitivity testing of the system was such that a full profile was obtainable even with 125pg of human DNA. Specificity testing was demonstrated by the lack of cross-reactivity with a variety of commonly encountered animal species and microbial pool. For the stability testing, full profiles can been obtained with humic acid concentration≤60ng/μL and hematin<500μM. Also, this multiplex system is suitable for mixture study. All of the minor alleles were called for ratios of 1:1, 1:3 and 3:1 of the mixture with the system. In addition, the whole PCR amplification can finish within 1h, making the system suitable for fast-detection. For the forensic evaluation of the multiplex system, 23 autosomal STRs included followed the Hardy-Weinberg equilibrium. A total of 268 alleles were detected for the 23 autosomal STR loci among 200 individuals. Since 23 autosomal STRs were independent from each other, CMECduo was 0.99999916563607 and CMECtri was 0.99999999986525. All the forensic efficiency parameters demonstrated that this multiplex system is highly polymorphic and informative in the Han population of China.
Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Entities:  

Keywords:  DNA typing; Forensic science; Multiplex PCR; Short tandem repeat (STR); Validation

Mesh:

Year:  2015        PMID: 25828368     DOI: 10.1016/j.fsigen.2015.03.008

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  13 in total

1.  Development of new PCR multiplex system by the simultaneous detection of 10 miniSTRs, SE33, Penta E, Penta D, and four Y-STRs.

Authors:  Muhammad Shafique; Muhammad Saqib Shahzad; Ziaur Rahman; Muhammad Adnan Shan; Rukhsana Perveen; Muhammad Shahzad; Manzoor Hussain; Ahmad Ali Shahid; Tayyab Husnain
Journal:  Int J Legal Med       Date:  2016-05-11       Impact factor: 2.686

2.  Validation of the Investigator 24plex QS Kit: a 6-dye multiplex PCR assay for forensic application in the Chinese Han population.

Authors:  Ruiyang Tao; Chong Chen; Xiang Sheng; Ruocheng Xia; Xiaochun Zhang; Jingyi Zhang; Zihao Yang; Suhua Zhang; Chengtao Li
Journal:  Forensic Sci Res       Date:  2019-12-06

3.  Developmental Validation of the Huaxia Platinum System and application in 3 main ethnic groups of China.

Authors:  Zheng Wang; Di Zhou; Zhenjun Jia; Luyao Li; Wei Wu; Chengtao Li; Yiping Hou
Journal:  Sci Rep       Date:  2016-08-08       Impact factor: 4.379

4.  Genetic characteristics and phylogenetic analysis of three Chinese ethnic groups using the Huaxia Platinum System.

Authors:  Mengge Wang; Zheng Wang; Guanglin He; Zhenjun Jia; Jing Liu; Yiping Hou
Journal:  Sci Rep       Date:  2018-02-05       Impact factor: 4.379

5.  Sequence investigation of 34 forensic autosomal STRs with massively parallel sequencing.

Authors:  Suhua Zhang; Yong Niu; Yingnan Bian; Rixia Dong; Xiling Liu; Yun Bao; Chao Jin; Hancheng Zheng; Chengtao Li
Journal:  Sci Rep       Date:  2018-05-01       Impact factor: 4.379

6.  Genome-based development of 15 microsatellite markers in fluorescent multiplexes for parentage testing in captive tigers.

Authors:  Xiao Zhao; Qiguan Qiu; Chang Li; Dongke Fu; Xuesong Hu; Shengjie Gao; Yugang Zhu; Haofang Mu; Runping Wang; Huanming Yang; Bo Li
Journal:  PeerJ       Date:  2020-05-06       Impact factor: 2.984

7.  Forensic investigation of 23 autosomal STRs and application in Han and Mongolia ethnic groups.

Authors:  Xiang Sheng; Yali Wang; Jiashuo Zhang; Liqin Chen; Yuan Lin; Zhenmin Zhao; Chengtao Li; Suhua Zhang
Journal:  Forensic Sci Res       Date:  2018-04-02

8.  Massively parallel sequencing of 231 autosomal SNPs with a custom panel: a SNP typing assay developed for human identification with Ion Torrent PGM.

Authors:  Suhua Zhang; Yingnan Bian; Anqi Chen; Hancheng Zheng; Yuzhen Gao; Yiping Hou; Chengtao Li
Journal:  Forensic Sci Res       Date:  2017-02-14

9.  An innovative panel containing a set of insertion/deletion loci for individual identification and its forensic efficiency evaluations in Chinese Hui ethnic minority.

Authors:  Wei Cui; Xiaoye Jin; Yuxin Guo; Chong Chen; Wenqing Zhang; Tingting Kong; Haotian Meng; Bofeng Zhu
Journal:  Mol Genet Genomic Med       Date:  2019-12-22       Impact factor: 2.183

10.  Evaluation of a six-dye multiplex composed of 27 markers for forensic analysis and databasing.

Authors:  Shuangshuang Wang; Feng Song; Mingkun Xie; Ke Zhang; Bowen Xie; Zhanglong Huang; Haibo Luo
Journal:  Mol Genet Genomic Med       Date:  2020-07-16       Impact factor: 2.183

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.