| Literature DB >> 31865639 |
Wei Cui1,2,3, Xiaoye Jin1,2,3, Yuxin Guo1,2,3, Chong Chen1,2,3, Wenqing Zhang1,2, Tingting Kong1,2, Haotian Meng1,2, Bofeng Zhu1,2,4.
Abstract
BACKGROUND: Individual identification is one of the most important tasks in the field of forensic genetics. Insertion/Deletion (InDel) polymorphism marker has been a promising marker for individual identification. However, a part of InDel loci in commonly used commercial kit show low polymorphisms in Chinese populations.Entities:
Keywords: Chinese Hui group; forensic genetics; genetic structure analysis; individual identification; insertion and deletion polymorphisms
Year: 2019 PMID: 31865639 PMCID: PMC7005628 DOI: 10.1002/mgg3.1074
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Figure 1Relevant parameters calculated based on 35 InDel loci. (a) inverse combined random match probability values in different intercontinental populations. AFR represents African populations; ESA‐CH represents three populations from China including CHB, CHS and CDX; ESA‐JV represents Japanese and Vietnamese populations; EUR represents European populations; SAS represents South Asian populations. (b) Histogram of the Ho values of 35 InDel loci in Chinese populations. (c) Histogram of insertion allelic frequencies of 35 InDel loci in the studied Chinese Hui group. (d) Line chart of different forensic parameters of 35 InDel loci in Chinese Hui group
Figure 2A heatmap of insertion allelic frequencies of 35 InDel loci in Chinese Hui group and 26 reference populations
Figure 3Heatmaps of D and pairwise Fst values. (a) the heatmap of D between Chinese Hui and 26 reference populations. The color degree ranged from yellow to red, with yellow for low D distance values and red for high D distance values. (b) the heatmap of Fst values between Chinese Hui and 26 reference populations. The color degree ranged from yellow to blue, with yellow for low Fst values and blue for high Fst values
Figure 4Principal component analysis of Chinese Hui and 26 compared populations. The Figure 4a was conducted based on PC1 and PC2, and the Figure 4b was conducted based on PC1 and PC3
Figure 5STRUCTURE analyses on the individual (a) and population (b) levels of 27 populations when assuming K = 2–6