Literature DB >> 25820430

Distribution of DNA-condensing protein complexes in the adenovirus core.

Ana J Pérez-Berná1, Sanjin Marion2, F Javier Chichón1, José J Fernández3, Dennis C Winkler4, José L Carrascosa1, Alasdair C Steven4, Antonio Šiber5, Carmen San Martín6.   

Abstract

Genome packing in adenovirus has long evaded precise description, since the viral dsDNA molecule condensed by proteins (core) lacks icosahedral order characteristic of the virus protein coating (capsid). We show that useful insights regarding the organization of the core can be inferred from the analysis of spatial distributions of the DNA and condensing protein units (adenosomes). These were obtained from the inspection of cryo-electron tomography reconstructions of individual human adenovirus particles. Our analysis shows that the core lacks symmetry and strict order, yet the adenosome distribution is not entirely random. The features of the distribution can be explained by modeling the condensing proteins and the part of the genome in each adenosome as very soft spheres, interacting repulsively with each other and with the capsid, producing a minimum outward pressure of ∼0.06 atm. Although the condensing proteins are connected by DNA in disrupted virion cores, in our models a backbone of DNA linking the adenosomes is not required to explain the experimental results in the confined state. In conclusion, the interior of an adenovirus infectious particle is a strongly confined and dense phase of soft particles (adenosomes) without a strictly defined DNA backbone.
© The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Year:  2015        PMID: 25820430      PMCID: PMC4417152          DOI: 10.1093/nar/gkv187

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  62 in total

1.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

2.  Chromatin-like organization of the adenovirus chromosome.

Authors:  J Corden; H M Engelking; G D Pearson
Journal:  Proc Natl Acad Sci U S A       Date:  1976-02       Impact factor: 11.205

3.  Folding of the DNA double helix in chromatin-like structures from simian virus 40.

Authors:  J E Germond; B Hirt; P Oudet; M Gross-Bellark; P Chambon
Journal:  Proc Natl Acad Sci U S A       Date:  1975-05       Impact factor: 11.205

4.  Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: IV. viral proteinase slides along DNA to locate and process its substrates.

Authors:  Paul C Blainey; Vito Graziano; Ana J Pérez-Berná; William J McGrath; S Jane Flint; Carmen San Martín; X Sunney Xie; Walter F Mangel
Journal:  J Biol Chem       Date:  2012-10-07       Impact factor: 5.157

5.  The role of capsid maturation on adenovirus priming for sequential uncoating.

Authors:  Ana J Pérez-Berná; Alvaro Ortega-Esteban; Rosa Menéndez-Conejero; Dennis C Winkler; Margarita Menéndez; Alasdair C Steven; S Jane Flint; Pedro J de Pablo; Carmen San Martín
Journal:  J Biol Chem       Date:  2012-07-12       Impact factor: 5.157

6.  Structural proteins of adenoviruses. XII. Location and neighbor relationship among proteins of adenovirion type 2 as revealed by enzymatic iodination, immunoprecipitation and chemical cross-linking.

Authors:  E Everitt; L Lutter; L Philipson
Journal:  Virology       Date:  1975-09       Impact factor: 3.616

7.  Structure and composition of the adenovirus type 2 core.

Authors:  D T Brown; M Westphal; B T Burlingham; U Winterhoff; W Doerfler
Journal:  J Virol       Date:  1975-08       Impact factor: 5.103

8.  Loss of nucleosomal DNA condensation coincides with appearance of a novel nuclear protein in dinoflagellates.

Authors:  Sebastian G Gornik; Kristina L Ford; Terrence D Mulhern; Antony Bacic; Geoffrey I McFadden; Ross F Waller
Journal:  Curr Biol       Date:  2012-11-15       Impact factor: 10.834

9.  Structure of adenovirus chromatin.

Authors:  M A Mirza; J Weber
Journal:  Biochim Biophys Acta       Date:  1982-01-26

10.  Effect of capsid confinement on the chromatin organization of the SV40 minichromosome.

Authors:  Gadiel Saper; Stanislav Kler; Roi Asor; Ariella Oppenheim; Uri Raviv; Daniel Harries
Journal:  Nucleic Acids Res       Date:  2012-12-20       Impact factor: 16.971

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  19 in total

1.  Structures of Adenovirus Incomplete Particles Clarify Capsid Architecture and Show Maturation Changes of Packaging Protein L1 52/55k.

Authors:  Gabriela N Condezo; Roberto Marabini; Silvia Ayora; José M Carazo; Raúl Alba; Miguel Chillón; Carmen San Martín
Journal:  J Virol       Date:  2015-07-15       Impact factor: 5.103

2.  Electrostatics-Driven Inflation of Elastic Icosahedral Shells as a Model for Swelling of Viruses.

Authors:  Anže Lošdorfer Božič; Antonio Šiber
Journal:  Biophys J       Date:  2018-08-07       Impact factor: 4.033

3.  Human Adenovirus Infection Causes Cellular E3 Ubiquitin Ligase MKRN1 Degradation Involving the Viral Core Protein pVII.

Authors:  Raviteja Inturi; Kwangchol Mun; Katrin Singethan; Sabrina Schreiner; Tanel Punga
Journal:  J Virol       Date:  2018-01-17       Impact factor: 5.103

4.  Cellular Zinc Finger Protein 622 Hinders Human Adenovirus Lytic Growth and Limits Binding of the Viral pVII Protein to Virus DNA.

Authors:  Kwangchol Mun; Tanel Punga
Journal:  J Virol       Date:  2019-01-17       Impact factor: 5.103

5.  Role of Condensing Particles in Polymer Confinement: A Model for Virus-Packed "Minichromosomes".

Authors:  Sanjin Marion; Carmen San Martín; Antonio Šiber
Journal:  Biophys J       Date:  2017-10-17       Impact factor: 4.033

6.  Adenovirus major core protein condenses DNA in clusters and bundles, modulating genome release and capsid internal pressure.

Authors:  Natalia Martín-González; Mercedes Hernando-Pérez; Gabriela N Condezo; Marta Pérez-Illana; Antonio Šiber; David Reguera; Philomena Ostapchuk; Patrick Hearing; Carmen San Martín; Pedro J de Pablo
Journal:  Nucleic Acids Res       Date:  2019-09-26       Impact factor: 16.971

7.  Dynamic competition for hexon binding between core protein VII and lytic protein VI promotes adenovirus maturation and entry.

Authors:  Mercedes Hernando-Pérez; Natalia Martín-González; Marta Pérez-Illana; Maarit Suomalainen; Gabriela N Condezo; Philomena Ostapchuk; José Gallardo; Margarita Menéndez; Urs F Greber; Patrick Hearing; Pedro J de Pablo; Carmen San Martín
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8.  An Adenovirus DNA Replication Factor, but Not Incoming Genome Complexes, Targets PML Nuclear Bodies.

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Review 9.  Adenovirus Core Proteins: Structure and Function.

Authors:  Shermila Kulanayake; Suresh K Tikoo
Journal:  Viruses       Date:  2021-02-28       Impact factor: 5.048

Review 10.  Adenovirus Structure: What Is New?

Authors:  José Gallardo; Marta Pérez-Illana; Natalia Martín-González; Carmen San Martín
Journal:  Int J Mol Sci       Date:  2021-05-15       Impact factor: 5.923

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