Literature DB >> 23043138

Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: IV. viral proteinase slides along DNA to locate and process its substrates.

Paul C Blainey1, Vito Graziano, Ana J Pérez-Berná, William J McGrath, S Jane Flint, Carmen San Martín, X Sunney Xie, Walter F Mangel.   

Abstract

Precursor proteins used in the assembly of adenovirus virions must be processed by the virally encoded adenovirus proteinase (AVP) before the virus particle becomes infectious. An activated adenovirus proteinase, the AVP-pVIc complex, was shown to slide along viral DNA with an extremely fast one-dimensional diffusion constant, 21.0 ± 1.9 × 10(6) bp(2)/s. In principle, one-dimensional diffusion can provide a means for DNA-bound proteinases to locate and process DNA-bound substrates. Here, we show that this is correct. In vitro, AVP-pVIc complexes processed a purified virion precursor protein in a DNA-dependent reaction; in a quasi in vivo environment, heat-disrupted ts-1 virions, AVP-pVIc complexes processed five different precursor proteins in DNA-dependent reactions. Sliding of AVP-pVIc complexes along DNA illustrates a new biochemical mechanism by which a proteinase can locate its substrates, represents a new paradigm for virion maturation, and reveals a new way of exploiting the surface of DNA.

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Year:  2012        PMID: 23043138      PMCID: PMC3548515          DOI: 10.1074/jbc.M112.407460

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  48 in total

1.  DNA binding provides a molecular strap activating the adenovirus proteinase.

Authors:  Sayan Gupta; Walter F Mangel; William J McGrath; Jennifer L Perek; Donna W Lee; Keiji Takamoto; Mark R Chance
Journal:  Mol Cell Proteomics       Date:  2004-06-24       Impact factor: 5.911

Review 2.  Facilitated target location in biological systems.

Authors:  P H von Hippel; O G Berg
Journal:  J Biol Chem       Date:  1989-01-15       Impact factor: 5.157

3.  Probing transcription factor dynamics at the single-molecule level in a living cell.

Authors:  Johan Elf; Gene-Wei Li; X Sunney Xie
Journal:  Science       Date:  2007-05-25       Impact factor: 47.728

4.  The effect of heat on the anatomy of the adenovirus.

Authors:  W C Russell; R C Valentine; H G Pereira
Journal:  J Gen Virol       Date:  1967-10       Impact factor: 3.891

5.  Roles of two conserved cysteine residues in the activation of human adenovirus proteinase.

Authors:  W J McGrath; M L Baniecki; E Peters; D T Green; W F Mangel
Journal:  Biochemistry       Date:  2001-12-04       Impact factor: 3.162

6.  Visualization of single molecules of RNA polymerase sliding along DNA.

Authors:  H Kabata; O Kurosawa; I Arai; M Washizu; S A Margarson; R E Glass; N Shimamoto
Journal:  Science       Date:  1993-12-03       Impact factor: 47.728

7.  Crystal structure of the human adenovirus proteinase with its 11 amino acid cofactor.

Authors:  J Ding; W J McGrath; R M Sweet; W F Mangel
Journal:  EMBO J       Date:  1996-04-15       Impact factor: 11.598

8.  Condensation and cohesion of lambda DNA in cell extracts and other media: implications for the structure and function of DNA in prokaryotes.

Authors:  L D Murphy; S B Zimmerman
Journal:  Biophys Chem       Date:  1995-12       Impact factor: 2.352

9.  Reassessment of Ellman's reagent.

Authors:  P W Riddles; R L Blakeley; B Zerner
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

10.  In the virion, the 11-amino-acid peptide cofactor pVIc is covalently linked to the adenovirus proteinase.

Authors:  William J McGrath; Katharine S Aherne; Walter F Mangel
Journal:  Virology       Date:  2002-05-10       Impact factor: 3.616

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  28 in total

1.  Testing the diffusing boundary model for the helix-coil transition in peptides.

Authors:  Sabine Neumaier; Andreas Reiner; Maren Büttner; Beat Fierz; Thomas Kiefhaber
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-22       Impact factor: 11.205

2.  Processing of the l1 52/55k protein by the adenovirus protease: a new substrate and new insights into virion maturation.

Authors:  Ana J Pérez-Berná; Walter F Mangel; William J McGrath; Vito Graziano; Jane Flint; Carmen San Martín
Journal:  J Virol       Date:  2013-11-13       Impact factor: 5.103

3.  Impact of adenovirus life cycle progression on the generation of canine helper-dependent vectors.

Authors:  P Fernandes; D Simão; M R Guerreiro; E J Kremer; A S Coroadinha; P M Alves
Journal:  Gene Ther       Date:  2014-10-23       Impact factor: 5.250

4.  Structures of Adenovirus Incomplete Particles Clarify Capsid Architecture and Show Maturation Changes of Packaging Protein L1 52/55k.

Authors:  Gabriela N Condezo; Roberto Marabini; Silvia Ayora; José M Carazo; Raúl Alba; Miguel Chillón; Carmen San Martín
Journal:  J Virol       Date:  2015-07-15       Impact factor: 5.103

5.  Single-molecule imaging at high fluorophore concentrations by local activation of dye.

Authors:  Hylkje J Geertsema; Aartje C Schulte; Lisanne M Spenkelink; William J McGrath; Seamus R Morrone; Jungsan Sohn; Walter F Mangel; Andrew Robinson; Antoine M van Oijen
Journal:  Biophys J       Date:  2015-02-17       Impact factor: 4.033

6.  Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: III. atomic resolution structure of the nascent form of the adenovirus proteinase.

Authors:  Mary Lynn Baniecki; William J McGrath; Walter F Mangel
Journal:  J Biol Chem       Date:  2012-10-07       Impact factor: 5.157

7.  Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: II. adenovirus proteinase is activated in an unusual one-dimensional biochemical reaction.

Authors:  Vito Graziano; Guobin Luo; Paul C Blainey; Ana J Pérez-Berná; William J McGrath; S Jane Flint; Carmen San Martín; X Sunney Xie; Walter F Mangel
Journal:  J Biol Chem       Date:  2012-10-07       Impact factor: 5.157

8.  Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: I. binding to DNA AND to hexon of the precursor to protein VI, pVI, of human adenovirus.

Authors:  Vito Graziano; William J McGrath; Maarit Suomalainen; Urs F Greber; Paul Freimuth; Paul C Blainey; Guobin Luo; X Sunney Xie; Walter F Mangel
Journal:  J Biol Chem       Date:  2012-10-07       Impact factor: 5.157

9.  Distribution of DNA-condensing protein complexes in the adenovirus core.

Authors:  Ana J Pérez-Berná; Sanjin Marion; F Javier Chichón; José J Fernández; Dennis C Winkler; José L Carrascosa; Alasdair C Steven; Antonio Šiber; Carmen San Martín
Journal:  Nucleic Acids Res       Date:  2015-03-27       Impact factor: 16.971

10.  Dynamic competition for hexon binding between core protein VII and lytic protein VI promotes adenovirus maturation and entry.

Authors:  Mercedes Hernando-Pérez; Natalia Martín-González; Marta Pérez-Illana; Maarit Suomalainen; Gabriela N Condezo; Philomena Ostapchuk; José Gallardo; Margarita Menéndez; Urs F Greber; Patrick Hearing; Pedro J de Pablo; Carmen San Martín
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-28       Impact factor: 11.205

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