Literature DB >> 25814682

Harnessing the heart of big data.

Sarah B Scruggs1, Karol Watson1, Andrew I Su1, Henning Hermjakob1, John R Yates1, Merry L Lindsey1, Peipei Ping2.   

Abstract

Entities:  

Keywords:  crowdsourcing; database; heart diseases; information storage and retrieval; metabolomics; proteomics; user-computer interface

Mesh:

Year:  2015        PMID: 25814682      PMCID: PMC4721634          DOI: 10.1161/CIRCRESAHA.115.306013

Source DB:  PubMed          Journal:  Circ Res        ISSN: 0009-7330            Impact factor:   17.367


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  13 in total

1.  Reengineering translational science: the time is right.

Authors:  Francis S Collins
Journal:  Sci Transl Med       Date:  2011-07-06       Impact factor: 17.956

2.  BioJS: an open source JavaScript framework for biological data visualization.

Authors:  John Gómez; Leyla J García; Gustavo A Salazar; Jose Villaveces; Swanand Gore; Alexander García; Maria J Martín; Guillaume Launay; Rafael Alcántara; Noemi Del-Toro; Marine Dumousseau; Sandra Orchard; Sameer Velankar; Henning Hermjakob; Chenggong Zong; Peipei Ping; Manuel Corpas; Rafael C Jiménez
Journal:  Bioinformatics       Date:  2013-02-23       Impact factor: 6.937

3.  Translational genomics. Clues from the resilient.

Authors:  Stephen H Friend; Eric E Schadt
Journal:  Science       Date:  2014-05-30       Impact factor: 47.728

4.  PSICQUIC and PSISCORE: accessing and scoring molecular interactions.

Authors:  Bruno Aranda; Hagen Blankenburg; Samuel Kerrien; Fiona S L Brinkman; Arnaud Ceol; Emilie Chautard; Jose M Dana; Javier De Las Rivas; Marine Dumousseau; Eugenia Galeota; Anna Gaulton; Johannes Goll; Robert E W Hancock; Ruth Isserlin; Rafael C Jimenez; Jules Kerssemakers; Jyoti Khadake; David J Lynn; Magali Michaut; Gavin O'Kelly; Keiichiro Ono; Sandra Orchard; Carlos Prieto; Sabry Razick; Olga Rigina; Lukasz Salwinski; Milan Simonovic; Sameer Velankar; Andrew Winter; Guanming Wu; Gary D Bader; Gianni Cesareni; Ian M Donaldson; David Eisenberg; Gerard J Kleywegt; John Overington; Sylvie Ricard-Blum; Mike Tyers; Mario Albrecht; Henning Hermjakob
Journal:  Nat Methods       Date:  2011-06-29       Impact factor: 28.547

5.  Reactome: a database of reactions, pathways and biological processes.

Authors:  David Croft; Gavin O'Kelly; Guanming Wu; Robin Haw; Marc Gillespie; Lisa Matthews; Michael Caudy; Phani Garapati; Gopal Gopinath; Bijay Jassal; Steven Jupe; Irina Kalatskaya; Shahana Mahajan; Bruce May; Nelson Ndegwa; Esther Schmidt; Veronica Shamovsky; Christina Yung; Ewan Birney; Henning Hermjakob; Peter D'Eustachio; Lincoln Stein
Journal:  Nucleic Acids Res       Date:  2010-11-09       Impact factor: 16.971

6.  Integration of cardiac proteome biology and medicine by a specialized knowledgebase.

Authors:  Nobel C Zong; Haomin Li; Hua Li; Maggie P Y Lam; Rafael C Jimenez; Christina S Kim; Ning Deng; Allen K Kim; Jeong Ho Choi; Ivette Zelaya; David Liem; David Meyer; Jacob Odeberg; Caiyun Fang; Hao-Jie Lu; Tao Xu; James Weiss; Huilong Duan; Mathias Uhlen; John R Yates; Rolf Apweiler; Junbo Ge; Henning Hermjakob; Peipei Ping
Journal:  Circ Res       Date:  2013-08-21       Impact factor: 17.367

Review 7.  Finding novel pharmaceuticals in the systems biology era using multiple effective drug targets, phenotypic screening and knowledge of transporters: where drug discovery went wrong and how to fix it.

Authors:  Douglas B Kell
Journal:  FEBS J       Date:  2013-04-22       Impact factor: 5.542

8.  Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data.

Authors:  Joshua C Denny; Lisa Bastarache; Marylyn D Ritchie; Robert J Carroll; Raquel Zink; Jonathan D Mosley; Julie R Field; Jill M Pulley; Andrea H Ramirez; Erica Bowton; Melissa A Basford; David S Carrell; Peggy L Peissig; Abel N Kho; Jennifer A Pacheco; Luke V Rasmussen; David R Crosslin; Paul K Crane; Jyotishman Pathak; Suzette J Bielinski; Sarah A Pendergrass; Hua Xu; Lucia A Hindorff; Rongling Li; Teri A Manolio; Christopher G Chute; Rex L Chisholm; Eric B Larson; Gail P Jarvik; Murray H Brilliant; Catherine A McCarty; Iftikhar J Kullo; Jonathan L Haines; Dana C Crawford; Daniel R Masys; Dan M Roden
Journal:  Nat Biotechnol       Date:  2013-12       Impact factor: 54.908

9.  The Gene Wiki in 2011: community intelligence applied to human gene annotation.

Authors:  Benjamin M Good; Erik L Clarke; Luca de Alfaro; Andrew I Su
Journal:  Nucleic Acids Res       Date:  2011-11-10       Impact factor: 16.971

Review 10.  Personalized medicine: risk prediction, targeted therapies and mobile health technology.

Authors:  Daniel F Hayes; Hugh S Markus; R David Leslie; Eric J Topol
Journal:  BMC Med       Date:  2014-02-28       Impact factor: 8.775

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  22 in total

Review 1.  Precision medicine in cardiology.

Authors:  Elliott M Antman; Joseph Loscalzo
Journal:  Nat Rev Cardiol       Date:  2016-06-30       Impact factor: 32.419

Review 2.  Operationalizing Precision Cardiovascular Medicine: Three Innovations.

Authors:  Jessica J Wang; Jamil A Aboulhosn; Ira S Hofer; Aman Mahajan; Yibin Wang; Thomas M Vondriska
Journal:  Circ Res       Date:  2016-10-14       Impact factor: 17.367

3.  Big Data Science Training Program at a Minority Serving Institution: Processes and Initial Outcomes.

Authors:  Archana Jaiswal McEligot; Math P Cuajungco; Sam Behseta; Laura Chandler; Harmanpreet Chauhan; Sinjini Mitra; Pimbucha Rusmevichientong; Shana Charles
Journal:  Calif J Health Promot       Date:  2018

Review 4.  Cardiac Fibroblast Activation Post-Myocardial Infarction: Current Knowledge Gaps.

Authors:  Yonggang Ma; Rugmani Padmanabhan Iyer; Mira Jung; Michael P Czubryt; Merry L Lindsey
Journal:  Trends Pharmacol Sci       Date:  2017-03-29       Impact factor: 14.819

Review 5.  Redefining the role of biomarkers in heart failure trials: expert consensus document.

Authors:  Frank Kramer; Hani N Sabbah; James J Januzzi; Faiez Zannad; J Peter van Tintelen; Erik B Schelbert; Raymond J Kim; Hendrik Milting; Richardus Vonk; Brien Neudeck; Richard Clark; Klaus Witte; Wilfried Dinh; Burkert Pieske; Javed Butler; Mihai Gheorghiade
Journal:  Heart Fail Rev       Date:  2017-05       Impact factor: 4.214

Review 6.  Proteomic analysis of the cardiac extracellular matrix: clinical research applications.

Authors:  Merry L Lindsey; Mira Jung; Michael E Hall; Kristine Y DeLeon-Pennell
Journal:  Expert Rev Proteomics       Date:  2018-01-09       Impact factor: 3.940

7.  Cardioinformatics: the nexus of bioinformatics and precision cardiology.

Authors:  Bohdan B Khomtchouk; Diem-Trang Tran; Kasra A Vand; Matthew Might; Or Gozani; Themistocles L Assimes
Journal:  Brief Bioinform       Date:  2020-12-01       Impact factor: 11.622

8.  Crossing Into the Next Frontier of Cardiac Extracellular Matrix Research.

Authors:  Francis G Spinale; Nikolaos G Frangogiannis; Boris Hinz; Jeffrey W Holmes; Zamaneh Kassiri; Merry L Lindsey
Journal:  Circ Res       Date:  2016-10-28       Impact factor: 17.367

9.  Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease.

Authors:  David A Liem; Sanjana Murali; Dibakar Sigdel; Yu Shi; Xuan Wang; Jiaming Shen; Howard Choi; John H Caufield; Wei Wang; Peipei Ping; JiaWei Han
Journal:  Am J Physiol Heart Circ Physiol       Date:  2018-05-18       Impact factor: 4.733

Review 10.  Myocardial infarction remodeling that progresses to heart failure: a signaling misunderstanding.

Authors:  Alan J Mouton; Osvaldo J Rivera; Merry L Lindsey
Journal:  Am J Physiol Heart Circ Physiol       Date:  2018-03-30       Impact factor: 4.733

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