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Literature DB >> 23435069

BioJS: an open source JavaScript framework for biological data visualization.

John Gómez¹, Leyla J García, Gustavo A Salazar, Jose Villaveces, Swanand Gore, Alexander García, Maria J Martín, Guillaume Launay, Rafael Alcántara, Noemi Del-Toro, Marine Dumousseau, Sandra Orchard, Sameer Velankar, Henning Hermjakob, Chenggong Zong, Peipei Ping, Manuel Corpas, Rafael C Jiménez.

Abstract

SUMMARY: BioJS is an open-source project whose main objective is the visualization of biological data in JavaScript. BioJS provides an easy-to-use consistent framework for bioinformatics application programmers. It follows a community-driven standard specification that includes a collection of components purposely designed to require a very simple configuration and installation. In addition to the programming framework, BioJS provides a centralized repository of components available for reutilization by the bioinformatics community.
AVAILABILITY AND IMPLEMENTATION: http://code.google.com/p/biojs/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Mesh：

Year: 2013 PMID： 23435069 PMCID： PMC3624812 DOI： 10.1093/bioinformatics/btt100

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

6 in total

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Authors: Peter J A Cock; Tiago Antao; Jeffrey T Chang; Brad A Chapman; Cymon J Cox; Andrew Dalke; Iddo Friedberg; Thomas Hamelryck; Frank Kauff; Bartek Wilczynski; Michiel J L de Hoon
Journal: Bioinformatics Date: 2009-03-20 Impact factor: 6.937

3. BioRuby: bioinformatics software for the Ruby programming language.

Authors: Naohisa Goto; Pjotr Prins; Mitsuteru Nakao; Raoul Bonnal; Jan Aerts; Toshiaki Katayama
Journal: Bioinformatics Date: 2010-08-25 Impact factor: 6.937

4. BioJava: an open-source framework for bioinformatics in 2012.

Authors: Andreas Prlić; Andrew Yates; Spencer E Bliven; Peter W Rose; Julius Jacobsen; Peter V Troshin; Mark Chapman; Jianjiong Gao; Chuan Hock Koh; Sylvain Foisy; Richard Holland; Gediminas Rimsa; Michael L Heuer; H Brandstätter-Müller; Philip E Bourne; Scooter Willis
Journal: Bioinformatics Date: 2012-08-09 Impact factor: 6.937

5. Extending CATH: increasing coverage of the protein structure universe and linking structure with function.

Authors: Alison L Cuff; Ian Sillitoe; Tony Lewis; Andrew B Clegg; Robert Rentzsch; Nicholas Furnham; Marialuisa Pellegrini-Calace; David Jones; Janet Thornton; Christine A Orengo
Journal: Nucleic Acids Res Date: 2010-11-19 Impact factor: 16.971

6. The IntAct molecular interaction database in 2012.

Authors: Samuel Kerrien; Bruno Aranda; Lionel Breuza; Alan Bridge; Fiona Broackes-Carter; Carol Chen; Margaret Duesbury; Marine Dumousseau; Marc Feuermann; Ursula Hinz; Christine Jandrasits; Rafael C Jimenez; Jyoti Khadake; Usha Mahadevan; Patrick Masson; Ivo Pedruzzi; Eric Pfeiffenberger; Pablo Porras; Arathi Raghunath; Bernd Roechert; Sandra Orchard; Henning Hermjakob
Journal: Nucleic Acids Res Date: 2011-11-24 Impact factor: 16.971

6 in total

62 in total

1. Harnessing the heart of big data.

Authors: Sarah B Scruggs; Karol Watson; Andrew I Su; Henning Hermjakob; John R Yates; Merry L Lindsey; Peipei Ping
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2. Sequence Diversity Diagram for comparative analysis of multiple sequence alignments.

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Journal: BMC Proc Date: 2014-08-28

3. Visual Omics Explorer (VOE): a cross-platform portal for interactive data visualization.

Authors: Baekdoo Kim; Thahmina Ali; Samuel Hosmer; Konstantinos Krampis
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4. panX: pan-genome analysis and exploration.

Authors: Wei Ding; Franz Baumdicker; Richard A Neher
Journal: Nucleic Acids Res Date: 2018-01-09 Impact factor: 16.971

5. MatrixDB, the extracellular matrix interaction database: updated content, a new navigator and expanded functionalities.

Authors: G Launay; R Salza; D Multedo; N Thierry-Mieg; S Ricard-Blum
Journal: Nucleic Acids Res Date: 2014-11-06 Impact factor: 16.971

6. Anatomy of BioJS, an open source community for the life sciences.

Authors: Guy Yachdav; Tatyana Goldberg; Sebastian Wilzbach; David Dao; Iris Shih; Saket Choudhary; Steve Crouch; Max Franz; Alexander García; Leyla J García; Björn A Grüning; Devasena Inupakutika; Ian Sillitoe; Anil S Thanki; Bruno Vieira; José M Villaveces; Maria V Schneider; Suzanna Lewis; Steve Pettifer; Burkhard Rost; Manuel Corpas
Journal: Elife Date: 2015-07-08 Impact factor: 8.140

7. The EMBL-EBI bioinformatics web and programmatic tools framework.

Authors: Weizhong Li; Andrew Cowley; Mahmut Uludag; Tamer Gur; Hamish McWilliam; Silvano Squizzato; Young Mi Park; Nicola Buso; Rodrigo Lopez
Journal: Nucleic Acids Res Date: 2015-04-06 Impact factor: 16.971

8. VisRseq: R-based visual framework for analysis of sequencing data.

Authors: Hamid Younesy; Torsten Möller; Matthew C Lorincz; Mohammad M Karimi; Steven J M Jones
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Review 9. Trends in IT Innovation to Build a Next Generation Bioinformatics Solution to Manage and Analyse Biological Big Data Produced by NGS Technologies.

Authors: Alexandre G de Brevern; Jean-Philippe Meyniel; Cécile Fairhead; Cécile Neuvéglise; Alain Malpertuy
Journal: Biomed Res Int Date: 2015-06-01 Impact factor: 3.411

Review 10. Data integration in biological research: an overview.

Authors: Vasileios Lapatas; Michalis Stefanidakis; Rafael C Jimenez; Allegra Via; Maria Victoria Schneider
Journal: J Biol Res (Thessalon) Date: 2015-09-02 Impact factor: 1.889