Literature DB >> 25808204

Arginine: Its pKa value revisited.

Carolyn A Fitch1, Gerald Platzer, Mark Okon, Bertrand E Garcia-Moreno, Lawrence P McIntosh.   

Abstract

Using complementary approaches of potentiometry and NMR spectroscopy, we have determined that the equilibrium acid dissociation constant (pKa value) of the arginine guanidinium group is 13.8 ± 0.1. This is substantially higher than that of ∼ 12 often used in structure-based electrostatics calculations and cited in biochemistry textbooks. The revised intrinsic pKa value helps explains why arginine side chains in proteins are always predominantly charged, even at pH values as great as 10. The high pKa value also reinforces the observation that arginine side chains are invariably protonated under physiological conditions of near neutral pH. This occurs even when the guanidinium moiety is buried in a hydrophobic micro-environment, such as that inside a protein or a lipid membrane, thought to be incompatible with the presence of a charged group.
© 2015 The Protein Society.

Entities:  

Keywords:  NMR spectroscopy; equilibrium acid dissociation constant; guanidinium; pH titration; pKa value; potentiometry; protein electrostatics; tautomer

Mesh:

Substances:

Year:  2015        PMID: 25808204      PMCID: PMC4420524          DOI: 10.1002/pro.2647

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  39 in total

1.  A redetermination of the titration dissociation constants of arginine and histidine with a demonstration of the zwitterion constitution of these molecules.

Authors:  T W Birch; L J Harris
Journal:  Biochem J       Date:  1930       Impact factor: 3.857

2.  Differential rates of proton exchange for the guanidinium nitrogens of L-arginine determined by natural-abundance nitrogen-15 nuclear magnetic resonance spectroscopy.

Authors:  I Yavari; J D Roberts
Journal:  Biochem Biophys Res Commun       Date:  1978-07-28       Impact factor: 3.575

3.  The hydration structure of guanidinium and thiocyanate ions: implications for protein stability in aqueous solution.

Authors:  P E Mason; G W Neilson; C E Dempsey; A C Barnes; J M Cruickshank
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-08       Impact factor: 11.205

4.  pH-dependent random coil (1)H, (13)C, and (15)N chemical shifts of the ionizable amino acids: a guide for protein pK a measurements.

Authors:  Gerald Platzer; Mark Okon; Lawrence P McIntosh
Journal:  J Biomol NMR       Date:  2014-09-20       Impact factor: 2.835

5.  Modeling amino acid side chains in proteins: 15N NMR spectra of guanidino groups in nonpolar environments.

Authors:  Yaowu Xiao; Mark Braiman
Journal:  J Phys Chem B       Date:  2005-09-08       Impact factor: 2.991

Review 6.  A twisted base? The role of arginine in enzyme-catalyzed proton abstractions.

Authors:  Yollete V Guillén Schlippe; Lizbeth Hedstrom
Journal:  Arch Biochem Biophys       Date:  2005-01-01       Impact factor: 4.013

7.  Large shifts in pKa values of lysine residues buried inside a protein.

Authors:  Daniel G Isom; Carlos A Castañeda; Brian R Cannon; Bertrand García-Moreno
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-09       Impact factor: 11.205

8.  Charges in the hydrophobic interior of proteins.

Authors:  Daniel G Isom; Carlos A Castañeda; Brian R Cannon; Priya D Velu; Bertrand García-Moreno E
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-26       Impact factor: 11.205

9.  Is arginine charged in a membrane?

Authors:  Libo Li; Igor Vorobyov; Alexander D MacKerell; Toby W Allen
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

10.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

Authors:  D S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; J L Markley; B D Sykes
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

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  73 in total

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Authors:  David A Hiller; Brian F Dunican; Sunitha Nallur; Nan-Sheng Li; Joseph A Piccirilli; Scott A Strobel
Journal:  Biochemistry       Date:  2020-04-24       Impact factor: 3.162

2.  Substrate Preferences Establish the Order of Cell Wall Assembly in Staphylococcus aureus.

Authors:  Kaitlin Schaefer; Tristan W Owens; Daniel Kahne; Suzanne Walker
Journal:  J Am Chem Soc       Date:  2018-02-09       Impact factor: 15.419

Review 3.  Hydrogenase Enzymes and Their Synthetic Models: The Role of Metal Hydrides.

Authors:  David Schilter; James M Camara; Mioy T Huynh; Sharon Hammes-Schiffer; Thomas B Rauchfuss
Journal:  Chem Rev       Date:  2016-06-29       Impact factor: 60.622

4.  The pKa values of the catalytic residues in the retaining glycoside hydrolase T26H mutant of T4 lysozyme.

Authors:  Jacob A Brockerman; Mark Okon; Stephen G Withers; Lawrence P McIntosh
Journal:  Protein Sci       Date:  2019-01-12       Impact factor: 6.725

5.  A Membrane Burial Potential with H-Bonds and Applications to Curved Membranes and Fast Simulations.

Authors:  Zongan Wang; John M Jumper; Sheng Wang; Karl F Freed; Tobin R Sosnick
Journal:  Biophys J       Date:  2018-10-23       Impact factor: 4.033

6.  Effect of poly-L-arginine in inhibiting scrapie prion protein of cultured cells.

Authors:  Muhammad Waqas; Hye-Mi Lee; Jeeyoung Kim; Glenn Telling; Jin-Ki Kim; Dae-Hwan Kim; Chongsuk Ryou
Journal:  Mol Cell Biochem       Date:  2017-01-07       Impact factor: 3.396

7.  Visualization of H atoms in the X-ray crystal structure of photoactive yellow protein: Does it contain low-barrier hydrogen bonds?

Authors:  Jimin Wang
Journal:  Protein Sci       Date:  2019-08-31       Impact factor: 6.725

8.  Cationic cholesterol derivative efficiently delivers the genes: in silico and in vitro studies.

Authors:  Jasmin Monpara; Divya Velga; Tripti Verma; Sanjay Gupta; Pradeep Vavia
Journal:  Drug Deliv Transl Res       Date:  2019-02       Impact factor: 4.617

9.  Ionization Properties of Histidine Residues in the Lipid Bilayer Membrane Environment.

Authors:  Ashley N Martfeld; Denise V Greathouse; Roger E Koeppe
Journal:  J Biol Chem       Date:  2016-07-20       Impact factor: 5.157

10.  Ligand accessibility to heme cytochrome b5 coordinating sphere and enzymatic activity enhancement upon tyrosine ionization.

Authors:  Alejandro K Samhan-Arias; Cristina M Cordas; Marta S Carepo; Luisa B Maia; Carlos Gutierrez-Merino; Isabel Moura; José J G Moura
Journal:  J Biol Inorg Chem       Date:  2019-03-05       Impact factor: 3.358

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