Literature DB >> 26777596

The Power of Natural Variation for Model Organism Biology.

Audrey P Gasch1, Bret A Payseur2, John E Pool3.   

Abstract

Genetic background effects have long been recognized and, in some cases studied, but they are often viewed as a nuisance by molecular biologists. We suggest that genetic variation currently represents a critical frontier for molecular studies. Human genetics has seen a surge of interest in genetic variation and its contributions to disease, but insights into disease mechanisms are difficult since information about gene function is lacking. By contrast, model organism genetics has excelled at revealing molecular mechanisms of cellular processes, but often de-emphasizes genetic variation and its functional consequences. We argue that model organism biology would benefit from incorporating natural variation, both to capture how well laboratory lines exemplify the species they represent and to inform on molecular processes and their variability. Such a synthesis would also greatly expand the relevance of model systems for studies of complex trait variation, including disease.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  genetic background; genetic mechanism; laboratory strain; model organism; natural variation; phenotypic diversity

Mesh:

Year:  2016        PMID: 26777596      PMCID: PMC4769656          DOI: 10.1016/j.tig.2015.12.003

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  59 in total

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Journal:  Nat Genet       Date:  2011-08-28       Impact factor: 38.330

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7.  Subspecific origin and haplotype diversity in the laboratory mouse.

Authors:  Hyuna Yang; Jeremy R Wang; John P Didion; Ryan J Buus; Timothy A Bell; Catherine E Welsh; François Bonhomme; Alex Hon-Tsen Yu; Michael W Nachman; Jaroslav Pialek; Priscilla Tucker; Pierre Boursot; Leonard McMillan; Gary A Churchill; Fernando Pardo-Manuel de Villena
Journal:  Nat Genet       Date:  2011-05-29       Impact factor: 38.330

8.  Natural polymorphisms in C. elegans HECW-1 E3 ligase affect pathogen avoidance behaviour.

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  23 in total

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4.  Variable paralog expression underlies phenotype variation.

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5.  Cryptic Genetic Variation in Evolutionary Developmental Genetics.

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6.  Diversification in wild populations of the model organism Anolis carolinensis: A genome-wide phylogeographic investigation.

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7.  Further support for aneuploidy tolerance in wild yeast and effects of dosage compensation on gene copy-number evolution.

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8.  Meiotic Interactors of a Mitotic Gene TAO3 Revealed by Functional Analysis of its Rare Variant.

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9.  Genome-wide association across Saccharomyces cerevisiae strains reveals substantial variation in underlying gene requirements for toxin tolerance.

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10.  Baseline mRNA expression differs widely between common laboratory strains of zebrafish.

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