Literature DB >> 35320571

Isolating Caenorhabditis elegans from the Natural Habitat.

Clotilde Gimond1, Nausicaa Poullet1,2, Christian Braendle3.   

Abstract

Wild populations of the model organism C. elegans represent a valuable resource, allowing for genetic characterization underlying natural phenotypic variation. Here we provide a simple protocol on how to sample and rapidly identify C. elegans wild isolates. We outline how to find suitable habitats and organic substrates, followed by describing isolation and identification of C. elegans live cultures based on easily recognizable morphological characteristics, molecular barcodes, and mating tests. This protocol uses standard laboratory equipment and requires little prior knowledge of C. elegans biology.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Caenorhabditis elegans; Ecology; Natural genetic variation; Natural habitat; Natural populations; Wild isolates

Mesh:

Year:  2022        PMID: 35320571     DOI: 10.1007/978-1-0716-2181-3_15

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  32 in total

1.  The natural history of Caenorhabditis elegans.

Authors:  Marie-Anne Félix; Christian Braendle
Journal:  Curr Biol       Date:  2010-11-23       Impact factor: 10.834

2.  Natural Genetic Variation in a Multigenerational Phenotype in C. elegans.

Authors:  Lise Frézal; Emilie Demoinet; Christian Braendle; Eric Miska; Marie-Anne Félix
Journal:  Curr Biol       Date:  2018-08-02       Impact factor: 10.834

3.  A Natural Mutational Event Uncovers a Life History Trade-Off via Hormonal Pleiotropy.

Authors:  Bénédicte Billard; Paul Vigne; Christian Braendle
Journal:  Curr Biol       Date:  2020-09-03       Impact factor: 10.834

Review 4.  The laboratory domestication of Caenorhabditis elegans.

Authors:  Mark G Sterken; L Basten Snoek; Jan E Kammenga; Erik C Andersen
Journal:  Trends Genet       Date:  2015-03-21       Impact factor: 11.639

5.  Workshop report: Caenorhabditis nematodes as model organisms to study trait variation and its evolution.

Authors:  Christian Braendle; Henrique Teotonio
Journal:  Worm       Date:  2015-03-06

6.  The prevalence of Caenorhabditis elegans across 1.5 years in selected North German locations: the importance of substrate type, abiotic parameters, and Caenorhabditis competitors.

Authors:  Carola Petersen; Philipp Dirksen; Swantje Prahl; Eike Andreas Strathmann; Hinrich Schulenburg
Journal:  BMC Ecol       Date:  2014-02-06       Impact factor: 2.964

7.  CeNDR, the Caenorhabditis elegans natural diversity resource.

Authors:  Daniel E Cook; Stefan Zdraljevic; Joshua P Roberts; Erik C Andersen
Journal:  Nucleic Acids Res       Date:  2016-10-03       Impact factor: 16.971

8.  A Novel Gene Underlies Bleomycin-Response Variation in Caenorhabditis elegans.

Authors:  Shannon C Brady; Stefan Zdraljevic; Karol W Bisaga; Robyn E Tanny; Daniel E Cook; Daehan Lee; Ye Wang; Erik C Andersen
Journal:  Genetics       Date:  2019-06-06       Impact factor: 4.562

9.  Selection and gene flow shape niche-associated variation in pheromone response.

Authors:  Daehan Lee; Stefan Zdraljevic; Daniel E Cook; Lise Frézal; Jung-Chen Hsu; Mark G Sterken; Joost A G Riksen; John Wang; Jan E Kammenga; Christian Braendle; Marie-Anne Félix; Frank C Schroeder; Erik C Andersen
Journal:  Nat Ecol Evol       Date:  2019-09-23       Impact factor: 15.460

10.  Deep sampling of Hawaiian Caenorhabditis elegans reveals high genetic diversity and admixture with global populations.

Authors:  Tim A Crombie; Stefan Zdraljevic; Daniel E Cook; Robyn E Tanny; Shannon C Brady; Ye Wang; Kathryn S Evans; Steffen Hahnel; Daehan Lee; Briana C Rodriguez; Gaotian Zhang; Joost van der Zwagg; Karin Kiontke; Erik C Andersen
Journal:  Elife       Date:  2019-12-03       Impact factor: 8.140

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