| Literature DB >> 25802843 |
Niamh M Denihan1, Geraldine B Boylan1, Deirdre M Murray1.
Abstract
Metabolomics, the latest "omic" technology, is defined as the comprehensive study of all low molecular weight biochemicals, "metabolites" present in an organism. As a systems biology approach, metabolomics has huge potential to progress our understanding of perinatal asphyxia and neonatal hypoxic-ischaemic encephalopathy, by uniquely detecting rapid biochemical pathway alterations in response to the hypoxic environment. The study of metabolomic biomarkers in the immediate neonatal period is not a trivial task and requires a number of specific considerations, unique to this disease and population. Recruiting a clearly defined cohort requires standardised multicentre recruitment with broad inclusion criteria and the participation of a range of multidisciplinary staff. Minimally invasive biospecimen collection is a priority for biomarker discovery. Umbilical cord blood presents an ideal medium as large volumes can be easily extracted and stored and the sample is not confounded by postnatal disease progression. Pristine biobanking and phenotyping are essential to ensure the validity of metabolomic findings. This paper provides an overview of the current state of the art in the field of metabolomics in perinatal asphyxia and neonatal hypoxic-ischaemic encephalopathy. We detail the considerations required to ensure high quality sampling and analysis, to support scientific progression in this important field.Entities:
Mesh:
Substances:
Year: 2015 PMID: 25802843 PMCID: PMC4329862 DOI: 10.1155/2015/254076
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Summary of metabolomic studies in animal models of hypoxia/asphyxia.
| Author, year | Ref | Study population | Specimen | Analytical platform | Metabolite alteration | Key finding |
|---|---|---|---|---|---|---|
| Fanos et al., 2014 | [ | Newborn piglets | Urine | 1H-NMR | 15 metabolites | Resuscitation with 21% O2 improves cellular recovery |
|
| ||||||
| Arduini et al., 2014 | [ | Newborn piglets | Retinal & choroid tissue | UPLC-MS/MS | Lactate | ↓mitochondrial metabolites, anaerobic shift |
|
| ||||||
| Murgia et al., 2013 | [ | Newborn piglets | Urine | 1H-NMR | n-Phenylacetylglycine, alanine, acetoacetate, methanol, glucose, sarcosine, succinate, dimethylamine | Reoxygenation speed alters metabolite profile |
|
| ||||||
| Solberg et al., 2013 | [ | Newborn piglets | Retinal tissue | UPLC-QTOFMS | CDP-choline, acetylcholine, and choline | Phospholipid synthesis involvement and neuroprotective metabolites |
|
| ||||||
| Skappak et al., 2013 | [ | Newborn piglets | Urine | 1H-NMR | Amino acids, energy metabolites, 1-methylnicotinamide & betaine | Urinary metabolites identify hypoxia |
|
| ||||||
| Liu et al., 2013 | [ | Mice | Brain tissue | 1H-NMR | Energy metabolites, ATP-ADP, valine, phosphocholine, lactate, glucose, and glutamate | Hypothermia treatment alters metabolites |
|
| ||||||
| Beckstrom et al., 2011 | [ | Macaques | Plasma | 2D GC/MS | 10 metabolites | Krebs cycle metabolites altered and cell membrane disturbance |
|
| ||||||
| Solberg et al., 2010 | [ | Newborn piglets | Plasma | LC-MS/MS | Alanine/BCAA, glycine/BCAA (correlation | ↓Krebs cycle intermediates & delayed recovery with 100% O2 resuscitation |
|
| ||||||
| Atzori et al., 2010 | [ | Newborn piglets | Urine | 1H-NMR | Creatinine, methylguanidine, hydroxyisobutyric acid, urea, and malonate | Prediction of death |
|
| ||||||
| van Cappellen van Walsum et al., 2001 | [ | Fetal lambs | CSF | 1H-NMR | Amino acids, BCAA, lactic acid, and hypoxanthine | Prolonged mild hypoxia leads to energy degradation |
Ref: reference; 1H-NMR: proton nuclear magnetic resonance (1H-NMR) spectroscopy; UPLC-MS: ultraperformance liquid chromatography-quadrupole time of flight mass spectrometry; UPLC-MS/MS: ultraperformance liquid chromatography-tandem mass spectrometry; GC/MS: two-dimensional gas chromatography-mass spectrometry; LC-MS/MS: liquid chromatography-tandem mass spectrometry; FIA-MS/MS: flow injection analysis-tandem mass spectrometry; BCAA: branched-chain amino acids; CSF: cerebrospinal fluid.