Literature DB >> 25794461

Wavelet methodology to improve single unit isolation in primary motor cortex cells.

Alexis Ortiz-Rosario1, Hojjat Adeli2, John A Buford3.   

Abstract

The proper isolation of action potentials recorded extracellularly from neural tissue is an active area of research in the fields of neuroscience and biomedical signal processing. This paper presents an isolation methodology for neural recordings using the wavelet transform (WT), a statistical thresholding scheme, and the principal component analysis (PCA) algorithm. The effectiveness of five different mother wavelets was investigated: biorthogonal, Daubachies, discrete Meyer, symmetric, and Coifman; along with three different wavelet coefficient thresholding schemes: fixed form threshold, Stein's unbiased estimate of risk, and minimax; and two different thresholding rules: soft and hard thresholding. The signal quality was evaluated using three different statistical measures: mean-squared error, root-mean squared, and signal to noise ratio. The clustering quality was evaluated using two different statistical measures: isolation distance, and L-ratio. This research shows that the selection of the mother wavelet has a strong influence on the clustering and isolation of single unit neural activity, with the Daubachies 4 wavelet and minimax thresholding scheme performing the best.
Copyright © 2015. Published by Elsevier B.V.

Entities:  

Keywords:  Neuronal cell isolation; Principal component analysis; Single units; Spike sorting; Statistical thresholding; Wavelet transform

Mesh:

Year:  2015        PMID: 25794461      PMCID: PMC5101837          DOI: 10.1016/j.jneumeth.2015.03.014

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  39 in total

1.  Spike sorting based on discrete wavelet transform coefficients.

Authors:  J C Letelier; P P Weber
Journal:  J Neurosci Methods       Date:  2000-09-15       Impact factor: 2.390

2.  Motor outputs from the primate reticular formation to shoulder muscles as revealed by stimulus-triggered averaging.

Authors:  Adam G Davidson; John A Buford
Journal:  J Neurophysiol       Date:  2004-03-10       Impact factor: 2.714

3.  Spike detection using the continuous wavelet transform.

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5.  A detailed and fast model of extracellular recordings.

Authors:  Luis A Camuñas-Mesa; Rodrigo Quian Quiroga
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6.  Modulation of local field potential power of the subthalamic nucleus during isometric force generation in patients with Parkinson's disease.

Authors:  E Florin; H S Dafsari; C Reck; M T Barbe; K A M Pauls; M Maarouf; V Sturm; G R Fink; L Timmermann
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7.  Measuring the motor output of the pontomedullary reticular formation in the monkey: do stimulus-triggered averaging and stimulus trains produce comparable results in the upper limbs?

Authors:  Wendy J Herbert; Adam G Davidson; John A Buford
Journal:  Exp Brain Res       Date:  2010-04-09       Impact factor: 1.972

Review 8.  Alzheimer's disease: models of computation and analysis of EEGs.

Authors:  Hojjat Adeli; Samanwoy Ghosh-Dastidar; Nahid Dadmehr
Journal:  Clin EEG Neurosci       Date:  2005-07       Impact factor: 1.843

9.  Chronic intracortical microelectrode arrays induce non-uniform, depth-related tissue responses.

Authors:  Andrew J Woolley; Himanshi A Desai; Kevin J Otto
Journal:  J Neural Eng       Date:  2013-02-21       Impact factor: 5.379

10.  A spatio-temporal wavelet-chaos methodology for EEG-based diagnosis of Alzheimer's disease.

Authors:  Hojjat Adeli; Samanwoy Ghosh-Dastidar; Nahid Dadmehr
Journal:  Neurosci Lett       Date:  2008-08-08       Impact factor: 3.046

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  3 in total

1.  MUSIC-Expected maximization gaussian mixture methodology for clustering and detection of task-related neuronal firing rates.

Authors:  Alexis Ortiz-Rosario; Hojjat Adeli; John A Buford
Journal:  Behav Brain Res       Date:  2016-09-17       Impact factor: 3.332

2.  Choosing Wavelet Methods, Filters, and Lengths for Functional Brain Network Construction.

Authors:  Zitong Zhang; Qawi K Telesford; Chad Giusti; Kelvin O Lim; Danielle S Bassett
Journal:  PLoS One       Date:  2016-06-29       Impact factor: 3.240

3.  Unsupervised Detection of High-Frequency Oscillations Using Time-Frequency Maps and Computer Vision.

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Journal:  Front Neurosci       Date:  2020-03-23       Impact factor: 4.677

  3 in total

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