Literature DB >> 23470125

A detailed and fast model of extracellular recordings.

Luis A Camuñas-Mesa1, Rodrigo Quian Quiroga.   

Abstract

We present a novel method to generate realistic simulations of extracellular recordings. The simulations were obtained by superimposing the activity of neurons placed randomly in a cube of brain tissue. Detailed models of individual neurons were used to reproduce the extracellular action potentials of close-by neurons. To reduce the computational load, the contributions of neurons further away were simulated using previously recorded spikes with their amplitude normalized by the distance to the recording electrode. For making the simulations more realistic, we also considered a model of a finite-size electrode by averaging the potential along the electrode surface and modeling the electrode-tissue interface with a capacitive filter. This model allowed studying the effect of the electrode diameter on the quality of the recordings and how it affects the number of identified neurons after spike sorting. Given that not all neurons are active at a time, we also generated simulations with different ratios of active neurons and estimated the ratio that matches the signal-to-noise values observed in real data. Finally, we used the model to simulate tetrode recordings.

Mesh:

Year:  2013        PMID: 23470125     DOI: 10.1162/NECO_a_00433

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  21 in total

Review 1.  Modelling and analysis of local field potentials for studying the function of cortical circuits.

Authors:  Gaute T Einevoll; Christoph Kayser; Nikos K Logothetis; Stefano Panzeri
Journal:  Nat Rev Neurosci       Date:  2013-11       Impact factor: 34.870

2.  Physical principles for scalable neural recording.

Authors:  Adam H Marblestone; Bradley M Zamft; Yael G Maguire; Mikhail G Shapiro; Thaddeus R Cybulski; Joshua I Glaser; Dario Amodei; P Benjamin Stranges; Reza Kalhor; David A Dalrymple; Dongjin Seo; Elad Alon; Michel M Maharbiz; Jose M Carmena; Jan M Rabaey; Edward S Boyden; George M Church; Konrad P Kording
Journal:  Front Comput Neurosci       Date:  2013-10-21       Impact factor: 2.380

3.  Minimum requirements for accurate and efficient real-time on-chip spike sorting.

Authors:  Joaquin Navajas; Deren Y Barsakcioglu; Amir Eftekhar; Andrew Jackson; Timothy G Constandinou; Rodrigo Quian Quiroga
Journal:  J Neurosci Methods       Date:  2014-04-24       Impact factor: 2.390

4.  SHYBRID: A Graphical Tool for Generating Hybrid Ground-Truth Spiking Data for Evaluating Spike Sorting Performance.

Authors:  Jasper Wouters; Fabian Kloosterman; Alexander Bertrand
Journal:  Neuroinformatics       Date:  2021-01

5.  Hybrid Scheme for Modeling Local Field Potentials from Point-Neuron Networks.

Authors:  Espen Hagen; David Dahmen; Maria L Stavrinou; Henrik Lindén; Tom Tetzlaff; Sacha J van Albada; Sonja Grün; Markus Diesmann; Gaute T Einevoll
Journal:  Cereb Cortex       Date:  2016-10-20       Impact factor: 5.357

6.  Fast simulation of extracellular action potential signatures based on a morphological filtering approximation.

Authors:  Harry Tran; Radu Ranta; Steven Le Cam; Valérie Louis-Dorr
Journal:  J Comput Neurosci       Date:  2020-01-17       Impact factor: 1.621

7.  Wavelet methodology to improve single unit isolation in primary motor cortex cells.

Authors:  Alexis Ortiz-Rosario; Hojjat Adeli; John A Buford
Journal:  J Neurosci Methods       Date:  2015-03-17       Impact factor: 2.390

Review 8.  Improving data quality in neuronal population recordings.

Authors:  Kenneth D Harris; Rodrigo Quian Quiroga; Jeremy Freeman; Spencer L Smith
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

9.  In vivo spatiotemporal patterns of oligodendrocyte and myelin damage at the neural electrode interface.

Authors:  Keying Chen; Steven M Wellman; Yalikun Yaxiaer; James R Eles; Takashi Dy Kozai
Journal:  Biomaterials       Date:  2020-11-23       Impact factor: 12.479

10.  Spatial-Temporal Dynamics of the Sensorimotor Cortex: Sustained and Transient Activity.

Authors:  E Salari; Z V Freudenburg; M J Vansteensel; N F Ramsey
Journal:  IEEE Trans Neural Syst Rehabil Eng       Date:  2018-05       Impact factor: 3.802

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