Literature DB >> 25790163

Navigating the current landscape of clinical genetic testing for inherited retinal dystrophies.

Kristy Lee1, Seema Garg2.   

Abstract

Inherited eye disorders are a significant cause of vision loss. Genetic testing can be particularly helpful for patients with inherited retinal dystrophies because of genetic heterogeneity and overlapping phenotypes. The need to identify a molecular diagnosis for retinal dystrophies is particularly important in the era of developing novel gene therapy-based treatments, such as the RPE65 gene-based clinical trials and others on the horizon, as well as recent advances in reproductive options. The introduction of massively parallel sequencing technologies has significantly advanced the identification of novel gene candidates and has expanded the landscape of genetic testing. In a relatively short time clinical medicine has progressed from limited testing options to a plethora of choices ranging from single-gene testing to whole-exome sequencing. This article outlines currently available genetic testing and factors to consider when selecting appropriate testing for patients with inherited retinal dystrophies.

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Year:  2015        PMID: 25790163     DOI: 10.1038/gim.2015.15

Source DB:  PubMed          Journal:  Genet Med        ISSN: 1098-3600            Impact factor:   8.822


  57 in total

1.  A paradigm shift in the delivery of services for diagnosis of inherited retinal disease.

Authors:  James O'Sullivan; Brendan G Mullaney; Sanjeev S Bhaskar; Jonathan E Dickerson; Georgina Hall; Anna O'Grady; Andrew Webster; Simon C Ramsden; Graeme C Black
Journal:  J Med Genet       Date:  2012-05       Impact factor: 6.318

Review 2.  Diagnostic clinical genome and exome sequencing.

Authors:  Leslie G Biesecker; Robert C Green
Journal:  N Engl J Med       Date:  2014-06-19       Impact factor: 91.245

3.  Next generation sequencing-based molecular diagnosis of retinitis pigmentosa: identification of a novel genotype-phenotype correlation and clinical refinements.

Authors:  Feng Wang; Hui Wang; Han-Fang Tuan; Duy H Nguyen; Vincent Sun; Vafa Keser; Sara J Bowne; Lori S Sullivan; Hongrong Luo; Ling Zhao; Xia Wang; Jacques E Zaneveld; Jason S Salvo; Sorath Siddiqui; Louise Mao; Dianna K Wheaton; David G Birch; Kari E Branham; John R Heckenlively; Cindy Wen; Ken Flagg; Henry Ferreyra; Jacqueline Pei; Ayesha Khan; Huanan Ren; Keqing Wang; Irma Lopez; Raheel Qamar; Juan C Zenteno; Raul Ayala-Ramirez; Beatriz Buentello-Volante; Qing Fu; David A Simpson; Yumei Li; Ruifang Sui; Giuliana Silvestri; Stephen P Daiger; Robert K Koenekoop; Kang Zhang; Rui Chen
Journal:  Hum Genet       Date:  2013-10-24       Impact factor: 4.132

Review 4.  Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

Authors:  David T Miller; Margaret P Adam; Swaroop Aradhya; Leslie G Biesecker; Arthur R Brothman; Nigel P Carter; Deanna M Church; John A Crolla; Evan E Eichler; Charles J Epstein; W Andrew Faucett; Lars Feuk; Jan M Friedman; Ada Hamosh; Laird Jackson; Erin B Kaminsky; Klaas Kok; Ian D Krantz; Robert M Kuhn; Charles Lee; James M Ostell; Carla Rosenberg; Stephen W Scherer; Nancy B Spinner; Dimitri J Stavropoulos; James H Tepperberg; Erik C Thorland; Joris R Vermeesch; Darrel J Waggoner; Michael S Watson; Christa Lese Martin; David H Ledbetter
Journal:  Am J Hum Genet       Date:  2010-05-14       Impact factor: 11.025

5.  Mutations in the RPE65 gene in patients with autosomal recessive retinitis pigmentosa or leber congenital amaurosis.

Authors:  H Morimura; G A Fishman; S A Grover; A B Fulton; E L Berson; T P Dryja
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-17       Impact factor: 11.205

6.  Clinical characteristics of rod and cone photoreceptor dystrophies in patients with mutations in the C8orf37 gene.

Authors:  Ramon A C van Huet; Alejandro Estrada-Cuzcano; Eyal Banin; Ygal Rotenstreich; Stephanie Hipp; Susanne Kohl; Carel B Hoyng; Anneke I den Hollander; Rob W J Collin; B Jeroen Klevering
Journal:  Invest Ophthalmol Vis Sci       Date:  2013-07-12       Impact factor: 4.799

7.  Clinical whole-exome sequencing: are we there yet?

Authors:  Paldeep Singh Atwal; Marie-Louise Brennan; Rachel Cox; Michael Niaki; Julia Platt; Margaret Homeyer; Andrea Kwan; Sylvie Parkin; Susan Schelley; Leah Slattery; Yael Wilnai; Jonathan Adam Bernstein; Gregory M Enns; Louanne Hudgins
Journal:  Genet Med       Date:  2014-02-13       Impact factor: 8.822

8.  Diagnostic challenges in retinitis pigmentosa: genotypic multiplicity and phenotypic variability.

Authors:  Susie Chang; Leah Vaccarella; Sunday Olatunji; Colleen Cebulla; John Christoforidis
Journal:  Curr Genomics       Date:  2011-06       Impact factor: 2.236

9.  Genetic heterogeneity and consanguinity lead to a "double hit": homozygous mutations of MYO7A and PDE6B in a patient with retinitis pigmentosa.

Authors:  Nitza Goldenberg-Cohen; Eyal Banin; Yael Zalzstein; Ben Cohen; Ygal Rotenstreich; Leah Rizel; Lina Basel-Vanagaite; Tamar Ben-Yosef
Journal:  Mol Vis       Date:  2013-07-20       Impact factor: 2.367

10.  ClinVar: public archive of relationships among sequence variation and human phenotype.

Authors:  Melissa J Landrum; Jennifer M Lee; George R Riley; Wonhee Jang; Wendy S Rubinstein; Deanna M Church; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2013-11-14       Impact factor: 16.971

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  24 in total

1.  A Report on Molecular Diagnostic Testing for Inherited Retinal Dystrophies by Targeted Genetic Analyses.

Authors:  Hema L Ramkumar; Harini V Gudiseva; Kameron T Kishaba; John J Suk; Rohan Verma; Keerti Tadimeti; John A Thorson; Radha Ayyagari
Journal:  Genet Test Mol Biomarkers       Date:  2016-12-22

2.  SPATA7: Evolving phenotype from cone-rod dystrophy to retinitis pigmentosa.

Authors:  Rodrigo Matsui; David B McGuigan Iii; Michaela L Gruzensky; Tomas S Aleman; Sharon B Schwartz; Alexander Sumaroka; Robert K Koenekoop; Artur V Cideciyan; Samuel G Jacobson
Journal:  Ophthalmic Genet       Date:  2016-02-08       Impact factor: 1.803

3.  Utility of No-Charge Panel Genetic Testing for Inherited Retinal Diseases in a Real-World Clinical Setting.

Authors:  Cynthia K McClard; Dimitrios Pollalis; Farzad Jamshidi; Ronald Kingsley; Sun Young Lee
Journal:  J Vitreoretin Dis       Date:  2022-08-25

4.  Pathogenic STX3 variants affecting the retinal and intestinal transcripts cause an early-onset severe retinal dystrophy in microvillus inclusion disease subjects.

Authors:  Ruth Heidelberger; Roger Janz; Andreas R Janecke; Xiaoqin Liu; Rüdiger Adam; Sumanth Punuru; Arne Viestenz; Valeria Strauß; Martin Laass; Elizabeth Sanchez; Roberto Adachi; Martha P Schatz; Ujwala S Saboo; Naveen Mittal; Klaus Rohrschneider; Johanna Escher; Anuradha Ganesh; Sana Al Zuhaibi; Fathiya Al Murshedi; Badr AlSaleem; Majid Alfadhel; Siham Al Sinani; Fowzan S Alkuraya; Lukas A Huber; Thomas Müller
Journal:  Hum Genet       Date:  2021-05-11       Impact factor: 4.132

Review 5.  Progress and prospects of next-generation sequencing testing for inherited retinal dystrophy.

Authors:  John Pei-Wen Chiang; Tina Lamey; Terri McLaren; Jennifer A Thompson; Hannah Montgomery; John De Roach
Journal:  Expert Rev Mol Diagn       Date:  2015-08-26       Impact factor: 5.225

6.  Isolated and Syndromic Retinal Dystrophy Caused by Biallelic Mutations in RCBTB1, a Gene Implicated in Ubiquitination.

Authors:  Frauke Coppieters; Giulia Ascari; Katharina Dannhausen; Konstantinos Nikopoulos; Frank Peelman; Marcus Karlstetter; Mingchu Xu; Cécile Brachet; Isabelle Meunier; Miltiadis K Tsilimbaris; Chrysanthi Tsika; Styliani V Blazaki; Sarah Vergult; Pietro Farinelli; Thalia Van Laethem; Miriam Bauwens; Marieke De Bruyne; Rui Chen; Thomas Langmann; Ruifang Sui; Françoise Meire; Carlo Rivolta; Christian P Hamel; Bart P Leroy; Elfride De Baere
Journal:  Am J Hum Genet       Date:  2016-08-04       Impact factor: 11.025

7.  An atlas of gene expression and gene co-regulation in the human retina.

Authors:  Michele Pinelli; Annamaria Carissimo; Luisa Cutillo; Ching-Hung Lai; Margherita Mutarelli; Maria Nicoletta Moretti; Marwah Veer Singh; Marianthi Karali; Diego Carrella; Mariateresa Pizzo; Francesco Russo; Stefano Ferrari; Diego Ponzin; Claudia Angelini; Sandro Banfi; Diego di Bernardo
Journal:  Nucleic Acids Res       Date:  2016-05-27       Impact factor: 16.971

8.  Diagnostic exome sequencing in 266 Dutch patients with visual impairment.

Authors:  Lonneke Haer-Wigman; Wendy Ag van Zelst-Stams; Rolph Pfundt; L Ingeborgh van den Born; Caroline Cw Klaver; Joke Bgm Verheij; Carel B Hoyng; Martijn H Breuning; Camiel Jf Boon; Anneke J Kievit; Virginie Jm Verhoeven; Jan Wr Pott; Suzanne Ceh Sallevelt; Johanna M van Hagen; Astrid S Plomp; Hester Y Kroes; Stefan H Lelieveld; Jayne Y Hehir-Kwa; Steven Castelein; Marcel Nelen; Hans Scheffer; Dorien Lugtenberg; Frans Pm Cremers; Lies Hoefsloot; Helger G Yntema
Journal:  Eur J Hum Genet       Date:  2017-02-22       Impact factor: 4.246

9.  Assessment of the incorporation of CNV surveillance into gene panel next-generation sequencing testing for inherited retinal diseases.

Authors:  Jamie M Ellingford; Bradley Horn; Christopher Campbell; Gavin Arno; Stephanie Barton; Catriona Tate; Sanjeev Bhaskar; Panagiotis I Sergouniotis; Rachel L Taylor; Keren J Carss; Lucy F L Raymond; Michel Michaelides; Simon C Ramsden; Andrew R Webster; Graeme C M Black
Journal:  J Med Genet       Date:  2017-10-26       Impact factor: 6.318

10.  Systematic evaluation of a targeted gene capture sequencing panel for molecular diagnosis of retinitis pigmentosa.

Authors:  Hui Huang; Yanhua Chen; Huishuang Chen; Yuanyuan Ma; Pei-Wen Chiang; Jing Zhong; Xuyang Liu; Jing Wu; Yan Su; Xin Li; Jianlian Deng; Yingping Huang; Xinxin Zhang; Yang Li; Ning Fan; Ying Wang; Lihui Tang; Jinting Shen; Meiyan Chen; Xiuqing Zhang; Deng Te; Santasree Banerjee; Hui Liu; Ming Qi; Xin Yi
Journal:  PLoS One       Date:  2018-04-11       Impact factor: 3.240

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