Literature DB >> 25764113

Investigating transcription reinitiation through in vitro approaches.

Giorgio Dieci1, Beatrice Fermi, Maria Cristina Bosio.   

Abstract

By influencing the number of RNA molecules repeatedly synthesized from the same gene, the control of transcription reinitiation has the potential to shape the transcriptome. Transcription reinitiation mechanisms have been mainly addressed in vitro, through approaches based on both crude and reconstituted systems. These studies support the notion that transcription reinitiation and its regulation rely on dedicated networks of molecular interactions within transcription machineries. At the same time, comparison with in vivo transcription rates suggests that additional mechanisms, factors and conditions must exist in the nucleus, whose biochemical elucidation is a fascinating challenge for future in vitro transcription studies.

Keywords:  RNA polymerase; chromatin template; in vitro transcription; reinitiation; template competition; termination

Mesh:

Substances:

Year:  2014        PMID: 25764113      PMCID: PMC4214232          DOI: 10.4161/trns.27704

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  72 in total

Review 1.  The economics of ribosome biosynthesis in yeast.

Authors:  J R Warner
Journal:  Trends Biochem Sci       Date:  1999-11       Impact factor: 13.807

2.  A transcription reinitiation intermediate that is stabilized by activator.

Authors:  N Yudkovsky; J A Ranish; S Hahn
Journal:  Nature       Date:  2000-11-09       Impact factor: 49.962

3.  Intragenic promoter adaptation and facilitated RNA polymerase III recycling in the transcription of SCR1, the 7SL RNA gene of Saccharomyces cerevisiae.

Authors:  Giorgio Dieci; Silvia Giuliodori; Manuela Catellani; Riccardo Percudani; Simone Ottonello
Journal:  J Biol Chem       Date:  2001-12-11       Impact factor: 5.157

4.  RapA, a bacterial homolog of SWI2/SNF2, stimulates RNA polymerase recycling in transcription.

Authors:  M V Sukhodolets; J E Cabrera; H Zhi; D J Jin
Journal:  Genes Dev       Date:  2001-12-15       Impact factor: 11.361

Review 5.  Detours and shortcuts to transcription reinitiation.

Authors:  Giorgio Dieci; André Sentenac
Journal:  Trends Biochem Sci       Date:  2003-04       Impact factor: 13.807

6.  ATP-dependent nucleosome remodeling and histone hyperacetylation synergistically facilitate transcription of chromatin.

Authors:  G Mizuguchi; A Vassilev; T Tsukiyama; Y Nakatani; C Wu
Journal:  J Biol Chem       Date:  2001-02-05       Impact factor: 5.157

7.  RNA polymerase II (Pol II)-TFIIF and Pol II-mediator complexes: the major stable Pol II complexes and their activity in transcription initiation and reinitiation.

Authors:  P Geetha Rani; Jeffrey A Ranish; Steven Hahn
Journal:  Mol Cell Biol       Date:  2004-02       Impact factor: 4.272

8.  Analysis of activator-dependent transcription reinitiation in vitro.

Authors:  Raphael Sandaltzopoulos; Peter B Becker
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

9.  Activator-independent functions of the yeast mediator sin4 complex in preinitiation complex formation and transcription reinitiation.

Authors:  Wendy M Reeves; Steven Hahn
Journal:  Mol Cell Biol       Date:  2003-01       Impact factor: 4.272

10.  Isolation and characterization of sigma(70)-retaining transcription elongation complexes from Escherichia coli.

Authors:  G Bar-Nahum; E Nudler
Journal:  Cell       Date:  2001-08-24       Impact factor: 41.582

View more
  3 in total

1.  Transcription recycling assays identify PAF1 as a driver for RNA Pol II recycling.

Authors:  Zhong Chen; William Hankey; Yue Zhao; Jeff Groth; Furong Huang; Hongyan Wang; Alexandre Rosa Campos; Jiaoti Huang; Robert G Roeder; Qianben Wang
Journal:  Nat Commun       Date:  2021-11-03       Impact factor: 17.694

2.  Active Center Control of Termination by RNA Polymerase III and tRNA Gene Transcription Levels In Vivo.

Authors:  Keshab Rijal; Richard J Maraia
Journal:  PLoS Genet       Date:  2016-08-12       Impact factor: 5.917

3.  Application of the SSB biosensor to study in vitro transcription.

Authors:  Alexander Cook; Yukti Hari-Gupta; Christopher P Toseland
Journal:  Biochem Biophys Res Commun       Date:  2018-01-31       Impact factor: 3.575

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.