Literature DB >> 11751638

RapA, a bacterial homolog of SWI2/SNF2, stimulates RNA polymerase recycling in transcription.

M V Sukhodolets1, J E Cabrera, H Zhi, D J Jin.   

Abstract

We report that RapA, an Escherichia coli RNA polymerase (RNAP)-associated homolog of SWI2/SNF2, is capable of dramatic activation of RNA synthesis. The RapA-mediated transcriptional activation in vitro depends on supercoiled DNA and high salt concentrations, a condition that is likely to render the DNA superhelix tightly compacted. Moreover, RapA activates transcription by stimulating RNAP recycling. Mutational analyses indicate that the ATPase activity of RapA is essential for its function as a transcriptional activator, and a rapA null mutant exhibits a growth defect on nutrient plates containing high salt concentrations in vivo. Thus, RapA acts as a general transcription factor and an integral component of the transcription machinery. The mode of action of RapA in remodeling posttranscription or posttermination complexes is discussed.

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Year:  2001        PMID: 11751638      PMCID: PMC312849          DOI: 10.1101/gad.936701

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  44 in total

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Authors:  C Muchardt; M Yaniv
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

2.  Bacterial RNA polymerase subunit omega and eukaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA polymerase assembly.

Authors:  L Minakhin; S Bhagat; A Brunning; E A Campbell; S A Darst; R H Ebright; K Severinov
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

3.  Interaction between RNA polymerase and RapA, a bacterial homolog of the SWI/SNF protein family.

Authors:  M V Sukhodolets; D J Jin
Journal:  J Biol Chem       Date:  2000-07-21       Impact factor: 5.157

4.  The effect of ionic conditions on the conformations of supercoiled DNA. I. Sedimentation analysis.

Authors:  V V Rybenkov; A V Vologodskii; N R Cozzarelli
Journal:  J Mol Biol       Date:  1997-03-28       Impact factor: 5.469

5.  RapA, a novel RNA polymerase-associated protein, is a bacterial homolog of SWI2/SNF2.

Authors:  M V Sukhodolets; D J Jin
Journal:  J Biol Chem       Date:  1998-03-20       Impact factor: 5.157

6.  The rpoB mutants destabilizing initiation complexes at stringently controlled promoters behave like "stringent" RNA polymerases in Escherichia coli.

Authors:  Y N Zhou; D J Jin
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-17       Impact factor: 11.205

7.  Studies on the omega subunit of Escherichia coli RNA polymerase--its role in the recovery of denatured enzyme activity.

Authors:  K Mukherjee; D Chatterji
Journal:  Eur J Biochem       Date:  1997-08-01

Review 8.  SWI2/SNF2 and related proteins: ATP-driven motors that disrupt protein-DNA interactions?

Authors:  M J Pazin; J T Kadonaga
Journal:  Cell       Date:  1997-03-21       Impact factor: 41.582

9.  Disruption of Escherichia coli hepA, an RNA polymerase-associated protein, causes UV sensitivity.

Authors:  O Muzzin; E A Campbell; L Xia; E Severinova; S A Darst; K Severinov
Journal:  J Biol Chem       Date:  1998-06-12       Impact factor: 5.157

10.  Generation of superhelical torsion by ATP-dependent chromatin remodeling activities.

Authors:  K Havas; A Flaus; M Phelan; R Kingston; P A Wade; D M Lilley; T Owen-Hughes
Journal:  Cell       Date:  2000-12-22       Impact factor: 41.582

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  36 in total

Review 1.  Single-molecule approaches to probe the structure, kinetics, and thermodynamics of nucleoprotein complexes that regulate transcription.

Authors:  Laura Finzi; David D Dunlap
Journal:  J Biol Chem       Date:  2010-04-09       Impact factor: 5.157

Review 2.  Bacterial Transcription as a Target for Antibacterial Drug Development.

Authors:  Cong Ma; Xiao Yang; Peter J Lewis
Journal:  Microbiol Mol Biol Rev       Date:  2016-01-13       Impact factor: 11.056

3.  Allosteric Activation of Bacterial Swi2/Snf2 (Switch/Sucrose Non-fermentable) Protein RapA by RNA Polymerase: BIOCHEMICAL AND STRUCTURAL STUDIES.

Authors:  Smita Kakar; Xianyang Fang; Lucyna Lubkowska; Yan Ning Zhou; Gary X Shaw; Yun-Xing Wang; Ding Jun Jin; Mikhail Kashlev; Xinhua Ji
Journal:  J Biol Chem       Date:  2015-08-13       Impact factor: 5.157

4.  Ribosomal protein S1 promotes transcriptional cycling.

Authors:  Maxim V Sukhodolets; Susan Garges; Sankar Adhya
Journal:  RNA       Date:  2006-06-14       Impact factor: 4.942

5.  Role of the rapA gene in controlling antibiotic resistance of Escherichia coli biofilms.

Authors:  S V Lynch; L Dixon; M R Benoit; E L Brodie; M Keyhan; P Hu; D F Ackerley; G L Andersen; A Matin
Journal:  Antimicrob Agents Chemother       Date:  2007-07-30       Impact factor: 5.191

Review 6.  Mechanisms for ATP-dependent chromatin remodelling: the means to the end.

Authors:  Andrew Flaus; Tom Owen-Hughes
Journal:  FEBS J       Date:  2011-09-08       Impact factor: 5.542

7.  Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress.

Authors:  Gen Nonaka; Matthew Blankschien; Christophe Herman; Carol A Gross; Virgil A Rhodius
Journal:  Genes Dev       Date:  2006-07-01       Impact factor: 11.361

8.  RNA polymerase: a nexus of gene regulation.

Authors:  John D Helmann
Journal:  Methods       Date:  2009-01       Impact factor: 3.608

9.  Genome-wide DNA microarray analysis of Francisella tularensis strains demonstrates extensive genetic conservation within the species but identifies regions that are unique to the highly virulent F. tularensis subsp. tularensis.

Authors:  Martien Broekhuijsen; Pär Larsson; Anders Johansson; Mona Byström; Ulla Eriksson; Eva Larsson; Richard G Prior; Anders Sjöstedt; Richard W Titball; Mats Forsman
Journal:  J Clin Microbiol       Date:  2003-07       Impact factor: 5.948

10.  An archaeal Rad54 protein remodels DNA and stimulates DNA strand exchange by RadA.

Authors:  Cynthia A Haseltine; Stephen C Kowalczykowski
Journal:  Nucleic Acids Res       Date:  2009-03-12       Impact factor: 16.971

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