Literature DB >> 25750463

Fast and Adaptive Sparse Precision Matrix Estimation in High Dimensions.

Weidong Liu1, Xi Luo2.   

Abstract

This paper proposes a new method for estimating sparse precision matrices in the high dimensional setting. It has been popular to study fast computation and adaptive procedures for this problem. We propose a novel approach, called Sparse Column-wise Inverse Operator, to address these two issues. We analyze an adaptive procedure based on cross validation, and establish its convergence rate under the Frobenius norm. The convergence rates under other matrix norms are also established. This method also enjoys the advantage of fast computation for large-scale problems, via a coordinate descent algorithm. Numerical merits are illustrated using both simulated and real datasets. In particular, it performs favorably on an HIV brain tissue dataset and an ADHD resting-state fMRI dataset.

Entities:  

Keywords:  Adaptivity; Convergence rates; Coordinate descent; Cross validation; Gaussian graphical models; Lasso

Year:  2015        PMID: 25750463      PMCID: PMC4347526          DOI: 10.1016/j.jmva.2014.11.005

Source DB:  PubMed          Journal:  J Multivar Anal        ISSN: 0047-259X            Impact factor:   1.473


  6 in total

1.  Fronto-temporal spontaneous resting state functional connectivity in pediatric bipolar disorder.

Authors:  Daniel P Dickstein; Cristina Gorrostieta; Hernando Ombao; Lisa D Goldberg; Alison C Brazel; Christopher J Gable; Clare Kelly; Dylan G Gee; Xi-Nian Zuo; F Xavier Castellanos; Michael P Milham
Journal:  Biol Psychiatry       Date:  2010-08-24       Impact factor: 13.382

2.  Sparse inverse covariance estimation with the graphical lasso.

Authors:  Jerome Friedman; Trevor Hastie; Robert Tibshirani
Journal:  Biostatistics       Date:  2007-12-12       Impact factor: 5.899

3.  NETWORK EXPLORATION VIA THE ADAPTIVE LASSO AND SCAD PENALTIES.

Authors:  Jianqing Fan; Yang Feng; Yichao Wu
Journal:  Ann Appl Stat       Date:  2009-06-01       Impact factor: 2.083

4.  Sparsistency and Rates of Convergence in Large Covariance Matrix Estimation.

Authors:  Clifford Lam; Jianqing Fan
Journal:  Ann Stat       Date:  2009       Impact factor: 4.028

5.  Regularization Paths for Generalized Linear Models via Coordinate Descent.

Authors:  Jerome Friedman; Trevor Hastie; Rob Tibshirani
Journal:  J Stat Softw       Date:  2010       Impact factor: 6.440

6.  Significant effects of antiretroviral therapy on global gene expression in brain tissues of patients with HIV-1-associated neurocognitive disorders.

Authors:  Alejandra Borjabad; Susan Morgello; Wei Chao; Seon-Young Kim; Andrew I Brooks; Jacinta Murray; Mary Jane Potash; David J Volsky
Journal:  PLoS Pathog       Date:  2011-09-01       Impact factor: 6.823

  6 in total
  6 in total

1.  Accelerated Path-following Iterative Shrinkage Thresholding Algorithm with Application to Semiparametric Graph Estimation.

Authors:  Tuo Zhao; Han Liu
Journal:  J Comput Graph Stat       Date:  2016-11-10       Impact factor: 2.302

2.  Generalized score matching for general domains.

Authors:  Shiqing Yu; Mathias Drton; Ali Shojaie
Journal:  Inf inference       Date:  2021-01-25

3.  Sparse graphical models via calibrated concave convex procedure with application to fMRI data.

Authors:  Sungtaek Son; Cheolwoo Park; Yongho Jeon
Journal:  J Appl Stat       Date:  2019-09-10       Impact factor: 1.416

4.  On the inconsistency of ℓ 1-penalised sparse precision matrix estimation.

Authors:  Otte Heinävaara; Janne Leppä-Aho; Jukka Corander; Antti Honkela
Journal:  BMC Bioinformatics       Date:  2016-12-13       Impact factor: 3.169

5.  Generalized Score Matching for Non-Negative Data.

Authors:  Shiqing Yu; Mathias Drton; Ali Shojaie
Journal:  J Mach Learn Res       Date:  2019-04       Impact factor: 5.177

6.  Gap-com: general model selection criterion for sparse undirected gene networks with nontrivial community structure.

Authors:  Markku Kuismin; Fatemeh Dodangeh; Mikko J Sillanpää
Journal:  G3 (Bethesda)       Date:  2022-02-04       Impact factor: 3.542

  6 in total

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