Literature DB >> 35706918

Sparse graphical models via calibrated concave convex procedure with application to fMRI data.

Sungtaek Son1,2, Cheolwoo Park3, Yongho Jeon1.   

Abstract

This paper proposes a calibrated concave convex procedure (calibrated CCCP) for high-dimensional graphical model selection. The calibrated CCCP approach for the smoothly clipped absolute deviation (SCAD) penalty is known to be path-consistent with probability converging to one in linear regression models. We implement the calibrated CCCP method with the SCAD penalty for the graphical model selection. We use a quadratic objective function for undirected Gaussian graphical models and adopt the SCAD penalty for sparse estimation. For the tuning procedure, we propose to use columnwise tuning on the quadratic objective function adjusted for test data. In a simulation study, we compare the performance of the proposed method with two existing graphical model estimators for high-dimensional data in terms of matrix error norms and support recovery rate. We also compare the bias and the variance of the estimated matrices. Then, we apply the method to functional magnetic resonance imaging (fMRI) data of an attention deficit hyperactivity disorders (ADHD) patient.
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Entities:  

Keywords:  CCCP; Inverse covariance matrix; SCAD; fMRI data; partial correlation

Year:  2019        PMID: 35706918      PMCID: PMC9041764          DOI: 10.1080/02664763.2019.1663158

Source DB:  PubMed          Journal:  J Appl Stat        ISSN: 0266-4763            Impact factor:   1.416


  9 in total

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Authors:  Xiaodong Lin; Xiangxiang Meng; Prasanna Karunanayaka; Scott K Holland
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Review 2.  Brain graphs: graphical models of the human brain connectome.

Authors:  Edward T Bullmore; Danielle S Bassett
Journal:  Annu Rev Clin Psychol       Date:  2011       Impact factor: 18.561

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Authors:  Tuo Zhao; Han Liu; Kathryn Roeder; John Lafferty; Larry Wasserman
Journal:  J Mach Learn Res       Date:  2012-04       Impact factor: 3.654

4.  Sparse inverse covariance estimation with the graphical lasso.

Authors:  Jerome Friedman; Trevor Hastie; Robert Tibshirani
Journal:  Biostatistics       Date:  2007-12-12       Impact factor: 5.899

5.  A novel sparse group Gaussian graphical model for functional connectivity estimation.

Authors:  Bernard Ng; Gaël Varoquaux; Jean Baptiste Poline; Bertrand Thirion
Journal:  Inf Process Med Imaging       Date:  2013

6.  Fast and Adaptive Sparse Precision Matrix Estimation in High Dimensions.

Authors:  Weidong Liu; Xi Luo
Journal:  J Multivar Anal       Date:  2015-03-01       Impact factor: 1.473

7.  NETWORK EXPLORATION VIA THE ADAPTIVE LASSO AND SCAD PENALTIES.

Authors:  Jianqing Fan; Yang Feng; Yichao Wu
Journal:  Ann Appl Stat       Date:  2009-06-01       Impact factor: 2.083

8.  One-step Sparse Estimates in Nonconcave Penalized Likelihood Models.

Authors:  Hui Zou; Runze Li
Journal:  Ann Stat       Date:  2008-08-01       Impact factor: 4.028

9.  CALIBRATING NON-CONVEX PENALIZED REGRESSION IN ULTRA-HIGH DIMENSION.

Authors:  Lan Wang; Yongdai Kim; Runze Li
Journal:  Ann Stat       Date:  2013-10-01       Impact factor: 4.028

  9 in total

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