Literature DB >> 25741260

A FreeSurfer-compliant consistent manual segmentation of infant brains spanning the 0-2 year age range.

Katyucia de Macedo Rodrigues1, Emma Ben-Avi2, Danielle D Sliva3, Myong-Sun Choe1, Marie Drottar1, Ruopeng Wang2, Bruce Fischl4, Patricia E Grant1, Lilla Zöllei2.   

Abstract

We present a detailed description of a set of FreeSurfer compatible segmentation guidelines tailored to infant MRI scans, and a unique data set of manually segmented acquisitions, with subjects nearly evenly distributed between 0 and 2 years of age. We believe that these segmentation guidelines and this dataset will have a wide range of potential uses in medicine and neuroscience.

Entities:  

Keywords:  MRI imaging; atlas; neuroimaging; pediatrics; segmentation

Year:  2015        PMID： 25741260      PMCID： PMC4332305          DOI： 10.3389/fnhum.2015.00021

Source DB:  PubMed          Journal:  Front Hum Neurosci        ISSN： 1662-5161            Impact factor:   3.169


  24 in total

1.  Regional infant brain development: an MRI-based morphometric analysis in 3 to 13 month olds.

Authors:  Myong-Sun Choe; Silvia Ortiz-Mantilla; Nikos Makris; Matt Gregas; Janine Bacic; Daniel Haehn; David Kennedy; Rudolph Pienaar; Verne S Caviness; April A Benasich; P Ellen Grant
Journal:  Cereb Cortex       Date:  2012-07-06       Impact factor: 5.357

2.  Automatic segmentation of MR images of the developing newborn brain.

Authors:  Marcel Prastawa; John H Gilmore; Weili Lin; Guido Gerig
Journal:  Med Image Anal       Date:  2005-10       Impact factor: 8.545

3.  Brain morphometry with multiecho MPRAGE.

Authors:  André J W van der Kouwe; Thomas Benner; David H Salat; Bruce Fischl
Journal:  Neuroimage       Date:  2008-02-01       Impact factor: 6.556

4.  Cortical surface-based analysis. II: Inflation, flattening, and a surface-based coordinate system.

Authors:  B Fischl; M I Sereno; A M Dale
Journal:  Neuroimage       Date:  1999-02       Impact factor: 6.556

5.  iBEAT: A toolbox for infant brain magnetic resonance image processing.

Authors:  Yakang Dai; Feng Shi; Li Wang; Guorong Wu; Dinggang Shen
Journal:  Neuroinformatics       Date:  2013-04

6.  Automatic segmentation of neonatal images using convex optimization and coupled level sets.

Authors:  Li Wang; Feng Shi; Weili Lin; John H Gilmore; Dinggang Shen
Journal:  Neuroimage       Date:  2011-07-05       Impact factor: 6.556

7.  Comprehensive brain MRI segmentation in high risk preterm newborns.

Authors:  Xintian Yu; Yanjie Zhang; Robert E Lasky; Sushmita Datta; Nehal A Parikh; Ponnada A Narayana
Journal:  PLoS One       Date:  2010-11-08       Impact factor: 3.240

Review 8.  FSL.

Authors:  Mark Jenkinson; Christian F Beckmann; Timothy E J Behrens; Mark W Woolrich; Stephen M Smith
Journal:  Neuroimage       Date:  2011-09-16       Impact factor: 6.556

9.  Volumetric navigators for prospective motion correction and selective reacquisition in neuroanatomical MRI.

Authors:  M Dylan Tisdall; Aaron T Hess; Martin Reuter; Ernesta M Meintjes; Bruce Fischl; André J W van der Kouwe
Journal:  Magn Reson Med       Date:  2011-12-28       Impact factor: 4.668

Review 10.  SPM: a history.

Authors:  John Ashburner
Journal:  Neuroimage       Date:  2011-10-17       Impact factor: 6.556
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  29 in total

1.  TRActs constrained by UnderLying INfant anatomy (TRACULInA): An automated probabilistic tractography tool with anatomical priors for use in the newborn brain.

Authors:  Lilla Zöllei; Camilo Jaimes; Elie Saliba; P Ellen Grant; Anastasia Yendiki
Journal:  Neuroimage       Date:  2019-05-24       Impact factor: 6.556

2.  Probabilistic tractography-based thalamic parcellation in healthy newborns and newborns with congenital heart disease.

Authors:  Camilo Jaimes; Henry H Cheng; Janet Soul; Silvina Ferradal; Yogesh Rathi; Borjan Gagoski; Jane W Newburger; P Ellen Grant; Lilla Zöllei
Journal:  J Magn Reson Imaging       Date:  2017-10-28       Impact factor: 4.813

3.  The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction.

Authors:  Antonios Makropoulos; Emma C Robinson; Andreas Schuh; Robert Wright; Sean Fitzgibbon; Jelena Bozek; Serena J Counsell; Johannes Steinweg; Katy Vecchiato; Jonathan Passerat-Palmbach; Gregor Lenz; Filippo Mortari; Tencho Tenev; Eugene P Duff; Matteo Bastiani; Lucilio Cordero-Grande; Emer Hughes; Nora Tusor; Jacques-Donald Tournier; Jana Hutter; Anthony N Price; Rui Pedro A G Teixeira; Maria Murgasova; Suresh Victor; Christopher Kelly; Mary A Rutherford; Stephen M Smith; A David Edwards; Joseph V Hajnal; Mark Jenkinson; Daniel Rueckert
Journal:  Neuroimage       Date:  2018-01-31       Impact factor: 6.556

4.  Anatomy-guided joint tissue segmentation and topological correction for 6-month infant brain MRI with risk of autism.

Authors:  Li Wang; Gang Li; Ehsan Adeli; Mingxia Liu; Zhengwang Wu; Yu Meng; Weili Lin; Dinggang Shen
Journal:  Hum Brain Mapp       Date:  2018-03-08       Impact factor: 5.038

5.  System-Specific Patterns of Thalamocortical Connectivity in Early Brain Development as Revealed by Structural and Functional MRI.

Authors:  Silvina L Ferradal; Borjan Gagoski; Camilo Jaimes; Francesca Yi; Clarisa Carruthers; Catherine Vu; Jonathan S Litt; Ryan Larsen; Brad Sutton; P Ellen Grant; Lilla Zöllei
Journal:  Cereb Cortex       Date:  2019-03-01       Impact factor: 5.357

6.  Structural Magnetic Resonance Imaging-Based Brain Morphology Study in Infants and Toddlers With Down Syndrome: The Effect of Comorbidities.

Authors:  Tadashi Shiohama; Jacob Levman; Nicole Baumer; Emi Takahashi
Journal:  Pediatr Neurol       Date:  2019-03-22       Impact factor: 3.372

7.  Heavy Prenatal Alcohol Exposure is Related to Smaller Corpus Callosum in Newborn MRI Scans.

Authors:  Sandra W Jacobson; Joseph L Jacobson; Christopher D Molteno; Christopher M R Warton; Pia Wintermark; H Eugene Hoyme; Greetje De Jong; Paul Taylor; Fleur Warton; Nadine M Lindinger; R Colin Carter; Neil C Dodge; Ellen Grant; Simon K Warfield; Lilla Zöllei; André J W van der Kouwe; Ernesta M Meintjes
Journal:  Alcohol Clin Exp Res       Date:  2017-04-03       Impact factor: 3.455

8.  Prenatal methamphetamine exposure is associated with reduced subcortical volumes in neonates.

Authors:  Fleur L Warton; Ernesta M Meintjes; Christopher M R Warton; Christopher D Molteno; Nadine M Lindinger; R Colin Carter; Lilla Zöllei; Pia Wintermark; Joseph L Jacobson; Andre van der Kouwe; Sandra W Jacobson
Journal:  Neurotoxicol Teratol       Date:  2017-10-22       Impact factor: 3.763

9.  A pediatric structural MRI analysis of healthy brain development from newborns to young adults.

Authors:  Jacob Levman; Patrick MacDonald; Ashley Ruyan Lim; Cynthia Forgeron; Emi Takahashi
Journal:  Hum Brain Mapp       Date:  2017-09-12       Impact factor: 5.038

Review 10.  Recent advances in the use of MRI to assess early human cortical development.

Authors:  Jeffrey J Neil; Christopher D Smyser
Journal:  J Magn Reson       Date:  2018-05-25       Impact factor: 2.229
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