Literature DB >> 25736916

Next-generation sequencing as a powerful motor for advances in the biological and environmental sciences.

Denis Faure1, Dominique Joly.   

Abstract

Next-generation sequencing (NGS) provides unprecedented insight into (meta)genomes, (meta)transcriptomes (cDNA) and (meta)barcodes of individuals, populations and communities of Archaea, Bacteria and Eukarya, as well as viruses. This special issue combines reviews and original papers reporting technical and scientific advances in genomics and transcriptomics of non-model species, as well as quantification and functional analyses of biodiversity using NGS technologies of the second and third generations. In addition, certain papers also exemplify the transition from Sanger to NGS barcodes in molecular taxonomy.

Mesh：

Year:  2015        PMID： 25736916     DOI： 10.1007/s10709-015-9831-8

Source DB:  PubMed          Journal:  Genetica        ISSN： 0016-6707            Impact factor:   1.082


  15 in total

1.  Genomics. China's sequencing powerhouse comes of age.

Authors:  Dennis Normile
Journal:  Science       Date:  2012-02-03       Impact factor: 47.728

2.  Performance comparison of benchtop high-throughput sequencing platforms.

Authors:  Nicholas J Loman; Raju V Misra; Timothy J Dallman; Chrystala Constantinidou; Saheer E Gharbia; John Wain; Mark J Pallen
Journal:  Nat Biotechnol       Date:  2012-05       Impact factor: 54.908

3.  Molecular biology: power sequencing.

Authors:  Brenton R Graveley
Journal:  Nature       Date:  2008-06-26       Impact factor: 49.962

4.  An improved taxonomic sampling is a necessary but not sufficient condition for resolving inter-families relationships in Caridean decapods.

Authors:  L Aznar-Cormano; J Brisset; T-Y Chan; L Corbari; N Puillandre; J Utge; M Zbinden; D Zuccon; S Samadi
Journal:  Genetica       Date:  2015-02-14       Impact factor: 1.082

5.  Next generation sequencing for characterizing biodiversity: promises and challenges.

Authors:  François Pompanon; Sarah Samadi
Journal:  Genetica       Date:  2015-01-23       Impact factor: 1.082

6.  Genome-wide characteristics of copy number variation in Polish Holstein and Polish Red cattle using SNP genotyping assay.

Authors:  A Gurgul; I Jasielczuk; T Szmatoła; K Pawlina; T Ząbek; K Żukowski; M Bugno-Poniewierska
Journal:  Genetica       Date:  2015-02-04       Impact factor: 1.082

7.  The case for cloud computing in genome informatics.

Authors:  Lincoln D Stein
Journal:  Genome Biol       Date:  2010-05-05       Impact factor: 13.583

8.  Technical challenges in metatranscriptomic studies applied to the bacterial communities of freshwater ecosystems.

Authors:  Noémie Pascault; Valentin Loux; Sandra Derozier; Véronique Martin; Didier Debroas; Selma Maloufi; Jean-François Humbert; Julie Leloup
Journal:  Genetica       Date:  2014-09-13       Impact factor: 1.082

9.  Genomic overview of the phytopathogen Pectobacterium wasabiae strain RNS 08.42.1A suggests horizontal acquisition of quorum-sensing genes.

Authors:  Slimane Khayi; Yannick Raoul des Essarts; Angélique Quêtu-Laurent; Mohieddine Moumni; Valérie Hélias; Denis Faure
Journal:  Genetica       Date:  2014-10-09       Impact factor: 1.082

10.  Core genome and plasmidome of the quorum-quenching bacterium Rhodococcus erythropolis.

Authors:  Anthony Kwasiborski; Samuel Mondy; Teik-Min Chong; Kok-Gan Chan; Amélie Beury-Cirou; Denis Faure
Journal:  Genetica       Date:  2015-02-13       Impact factor: 1.082
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  6 in total

1.  Transcriptome analysis and molecular marker discovery in Solanum incanum and S. aethiopicum, two close relatives of the common eggplant (Solanum melongena) with interest for breeding.

Authors:  P Gramazio; J Blanca; P Ziarsolo; F J Herraiz; M Plazas; J Prohens; S Vilanova
Journal:  BMC Genomics       Date:  2016-04-23       Impact factor: 3.969

2.  Development of EST-SSR markers based on transcriptome and its validation in ginger (Zingiber officinale Rosc.).

Authors:  Venugopal Vidya; Duraisamy Prasath; Mohandas Snigdha; Ramasamy Gobu; Charles Sona; Chandan Suravi Maiti
Journal:  PLoS One       Date:  2021-10-27       Impact factor: 3.240

3.  The gut microbiota of wild wintering great bustard (Otis tarda dybowskii): survey data from two consecutive years.

Authors:  Zhiyuan Lu; Sisi Li; Hongxia Li; Zhucheng Wang; Derong Meng; Jingze Liu
Journal:  PeerJ       Date:  2021-11-30       Impact factor: 2.984

4.  Next-generation genotyping of hypervariable loci in many individuals of a non-model species: technical and theoretical implications.

Authors:  Kathleen E Grogan; Gwendolyn J McGinnis; Michelle L Sauther; Frank P Cuozzo; Christine M Drea
Journal:  BMC Genomics       Date:  2016-03-08       Impact factor: 3.969

5.  The European Classical Swine Fever Virus Database: Blueprint for a Pathogen-Specific Sequence Database with Integrated Sequence Analysis Tools.

Authors:  Alexander Postel; Stefanie Schmeiser; Bernd Zimmermann; Paul Becher
Journal:  Viruses       Date:  2016-11-07       Impact factor: 5.048

6.  Development and Application of Transcriptome-Derived Microsatellites in Actinidia eriantha (Actinidiaceae).

Authors:  Rui Guo; Jacob B Landis; Michael J Moore; Aiping Meng; Shuguang Jian; Xiaohong Yao; Hengchang Wang
Journal:  Front Plant Sci       Date:  2017-08-25       Impact factor: 5.753
  6 in total

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