Literature DB >> 18580940

Molecular biology: power sequencing.

Brenton R Graveley.   

Abstract

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Year:  2008        PMID： 18580940      PMCID： PMC4386836          DOI： 10.1038/4531197b

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  10 in total

1.  Complementary DNA sequencing: expressed sequence tags and human genome project.

Authors:  M D Adams; J M Kelley; J D Gocayne; M Dubnick; M H Polymeropoulos; H Xiao; C R Merril; A Wu; B Olde; R F Moreno
Journal:  Science       Date:  1991-06-21       Impact factor: 47.728

2.  Genome-wide in situ exon capture for selective resequencing.

Authors:  Emily Hodges; Zhenyu Xuan; Vivekanand Balija; Melissa Kramer; Michael N Molla; Steven W Smith; Christina M Middle; Matthew J Rodesch; Thomas J Albert; Gregory J Hannon; W Richard McCombie
Journal:  Nat Genet       Date:  2007-11-04       Impact factor: 38.330

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

Review 4.  Sequence census methods for functional genomics.

Authors:  Barbara Wold; Richard M Myers
Journal:  Nat Methods       Date:  2007-12-19       Impact factor: 28.547

5.  The transcriptional landscape of the yeast genome defined by RNA sequencing.

Authors:  Ugrappa Nagalakshmi; Zhong Wang; Karl Waern; Chong Shou; Debasish Raha; Mark Gerstein; Michael Snyder
Journal:  Science       Date:  2008-05-01       Impact factor: 47.728

6.  Mapping and quantifying mammalian transcriptomes by RNA-Seq.

Authors:  Ali Mortazavi; Brian A Williams; Kenneth McCue; Lorian Schaeffer; Barbara Wold
Journal:  Nat Methods       Date:  2008-05-30       Impact factor: 28.547

7.  Stem cell transcriptome profiling via massive-scale mRNA sequencing.

Authors:  Nicole Cloonan; Alistair R R Forrest; Gabriel Kolle; Brooke B A Gardiner; Geoffrey J Faulkner; Mellissa K Brown; Darrin F Taylor; Anita L Steptoe; Shivangi Wani; Graeme Bethel; Alan J Robertson; Andrew C Perkins; Stephen J Bruce; Clarence C Lee; Swati S Ranade; Heather E Peckham; Jonathan M Manning; Kevin J McKernan; Sean M Grimmond
Journal:  Nat Methods       Date:  2008-05-30       Impact factor: 28.547

8.  Highly integrated single-base resolution maps of the epigenome in Arabidopsis.

Authors:  Ryan Lister; Ronan C O'Malley; Julian Tonti-Filippini; Brian D Gregory; Charles C Berry; A Harvey Millar; Joseph R Ecker
Journal:  Cell       Date:  2008-05-02       Impact factor: 41.582

9.  Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing.

Authors:  Peter J Campbell; Philip J Stephens; Erin D Pleasance; Sarah O'Meara; Heng Li; Thomas Santarius; Lucy A Stebbings; Catherine Leroy; Sarah Edkins; Claire Hardy; Jon W Teague; Andrew Menzies; Ian Goodhead; Daniel J Turner; Christopher M Clee; Michael A Quail; Antony Cox; Clive Brown; Richard Durbin; Matthew E Hurles; Paul A W Edwards; Graham R Bignell; Michael R Stratton; P Andrew Futreal
Journal:  Nat Genet       Date:  2008-04-27       Impact factor: 38.330

10.  Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution.

Authors:  Brian T Wilhelm; Samuel Marguerat; Stephen Watt; Falk Schubert; Valerie Wood; Ian Goodhead; Christopher J Penkett; Jane Rogers; Jürg Bähler
Journal:  Nature       Date:  2008-05-18       Impact factor: 49.962
  10 in total
  26 in total

1.  Identification and characterization of a short 2'-3' bond-forming ribozyme.

Authors:  Duncan J Smith; Maria M Konarska
Journal:  RNA       Date:  2008-11-24       Impact factor: 4.942

2.  Inference of isoforms from short sequence reads.

Authors:  Jianxing Feng; Wei Li; Tao Jiang
Journal:  J Comput Biol       Date:  2011-03       Impact factor: 1.479

Review 3.  The use of high-throughput sequencing methods for plant microRNA research.

Authors:  Xiaoxia Ma; Zhonghai Tang; Jingping Qin; Yijun Meng
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

Review 4.  Regulation of circRNA biogenesis.

Authors:  Ling-Ling Chen; Li Yang
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

5.  ProbFAST: Probabilistic functional analysis system tool.

Authors:  Israel T Silva; Ricardo Z N Vêncio; Thiago Y K Oliveira; Greice A Molfetta; Wilson A Silva
Journal:  BMC Bioinformatics       Date:  2010-03-30       Impact factor: 3.169

6.  Large introns in relation to alternative splicing and gene evolution: a case study of Drosophila bruno-3.

Authors:  Nikolai P Kandul; Mohamed A F Noor
Journal:  BMC Genet       Date:  2009-10-19       Impact factor: 2.797

7.  A simple method for directional transcriptome sequencing using Illumina technology.

Authors:  Nicholas J Croucher; Maria C Fookes; Timothy T Perkins; Daniel J Turner; Samuel B Marguerat; Thomas Keane; Michael A Quail; Miao He; Sammey Assefa; Jürg Bähler; Robert A Kingsley; Julian Parkhill; Stephen D Bentley; Gordon Dougan; Nicholas R Thomson
Journal:  Nucleic Acids Res       Date:  2009-12       Impact factor: 16.971

8.  Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing.

Authors:  Shrinivasrao P Mane; Clive Evans; Kristal L Cooper; Oswald R Crasta; Otto Folkerts; Stephen K Hutchison; Timothy T Harkins; Danielle Thierry-Mieg; Jean Thierry-Mieg; Roderick V Jensen
Journal:  BMC Genomics       Date:  2009-06-12       Impact factor: 3.969

9.  Conserved expression patterns predict microRNA targets.

Authors:  William Ritchie; Megha Rajasekhar; Stephane Flamant; John E J Rasko
Journal:  PLoS Comput Biol       Date:  2009-09-25       Impact factor: 4.475

10.  H-DBAS: human-transcriptome database for alternative splicing: update 2010.

Authors:  Jun-ichi Takeda; Yutaka Suzuki; Ryuichi Sakate; Yoshiharu Sato; Takashi Gojobori; Tadashi Imanishi; Sumio Sugano
Journal:  Nucleic Acids Res       Date:  2009-12-07       Impact factor: 16.971
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