Literature DB >> 25736085

Ribonucleotides in DNA: hidden in plain sight.

Sue Jinks-Robertson1, Hannah L Klein2.   

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Year:  2015        PMID： 25736085     DOI： 10.1038/nsmb.2981

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN： 1545-9985            Impact factor:   15.369


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  25 in total

1.  Intrinsic coupling of lagging-strand synthesis to chromatin assembly.

Authors:  Duncan J Smith; Iestyn Whitehouse
Journal:  Nature       Date:  2012-03-14       Impact factor: 49.962

2.  Ribonucleotides are signals for mismatch repair of leading-strand replication errors.

Authors:  Scott A Lujan; Jessica S Williams; Anders R Clausen; Alan B Clark; Thomas A Kunkel
Journal:  Mol Cell       Date:  2013-04-18       Impact factor: 17.970

Review 3.  Ribonuclease H: the enzymes in eukaryotes.

Authors:  Susana M Cerritelli; Robert J Crouch
Journal:  FEBS J       Date:  2008-02-18       Impact factor: 5.542

4.  RNase H2-initiated ribonucleotide excision repair.

Authors:  Justin L Sparks; Hyongi Chon; Susana M Cerritelli; Thomas A Kunkel; Erik Johansson; Robert J Crouch; Peter M Burgers
Journal:  Mol Cell       Date:  2012-08-02       Impact factor: 17.970

5.  Capture and sequence analysis of RNAs with terminal 2',3'-cyclic phosphates.

Authors:  Kevin Schutz; Jay R Hesselberth; Stanley Fields
Journal:  RNA       Date:  2010-01-14       Impact factor: 4.942

6.  Identification of a novel type of spacer element required for imprinting in fission yeast.

Authors:  Suha Sayrac; Sonya Vengrova; Emma L Godfrey; Jacob Z Dalgaard
Journal:  PLoS Genet       Date:  2011-03-10       Impact factor: 5.917

7.  Genome instability due to ribonucleotide incorporation into DNA.

Authors:  Stephanie A Nick McElhinny; Dinesh Kumar; Alan B Clark; Danielle L Watt; Brian E Watts; Else-Britt Lundström; Erik Johansson; Andrei Chabes; Thomas A Kunkel
Journal:  Nat Chem Biol       Date:  2010-08-22       Impact factor: 15.040

8.  Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation.

Authors:  Anders R Clausen; Scott A Lujan; Adam B Burkholder; Clinton D Orebaugh; Jessica S Williams; Maryam F Clausen; Ewa P Malc; Piotr A Mieczkowski; David C Fargo; Duncan J Smith; Thomas A Kunkel
Journal:  Nat Struct Mol Biol       Date:  2015-01-26       Impact factor: 15.369

9.  A global profile of replicative polymerase usage.

Authors:  Yasukazu Daigaku; Andrea Keszthelyi; Carolin A Müller; Izumi Miyabe; Tony Brooks; Renata Retkute; Mike Hubank; Conrad A Nieduszynski; Antony M Carr
Journal:  Nat Struct Mol Biol       Date:  2015-02-09       Impact factor: 15.369

10.  Enzymatic removal of ribonucleotides from DNA is essential for mammalian genome integrity and development.

Authors:  Martin A M Reijns; Björn Rabe; Rachel E Rigby; Pleasantine Mill; Katy R Astell; Laura A Lettice; Shelagh Boyle; Andrea Leitch; Margaret Keighren; Fiona Kilanowski; Paul S Devenney; David Sexton; Graeme Grimes; Ian J Holt; Robert E Hill; Martin S Taylor; Kirstie A Lawson; Julia R Dorin; Andrew P Jackson
Journal:  Cell       Date:  2012-05-10       Impact factor: 41.582
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  21 in total

1.  Both R-loop removal and ribonucleotide excision repair activities of RNase H2 contribute substantially to chromosome stability.

Authors:  Deborah A Cornelio; Hailey N C Sedam; Jessica A Ferrarezi; Nadia M V Sampaio; Juan Lucas Argueso
Journal:  DNA Repair (Amst)       Date:  2017-02-20

2.  Stimulation of Chromosomal Rearrangements by Ribonucleotides.

Authors:  Hailey N Conover; Scott A Lujan; Mary J Chapman; Deborah A Cornelio; Rabab Sharif; Jessica S Williams; Alan B Clark; Francheska Camilo; Thomas A Kunkel; Juan Lucas Argueso
Journal:  Genetics       Date:  2015-09-22       Impact factor: 4.562

Review 3.  Genomic methods for measuring DNA replication dynamics.

Authors:  Michelle L Hulke; Dashiell J Massey; Amnon Koren
Journal:  Chromosome Res       Date:  2019-12-17       Impact factor: 5.239

4.  Reconsidering DNA Polymerases at the Replication Fork in Eukaryotes.

Authors:  Bruce Stillman
Journal:  Mol Cell       Date:  2015-07-16       Impact factor: 17.970

5.  Yeast Systems Biology: The Continuing Challenge of Eukaryotic Complexity.

Authors:  Stephen G Oliver
Journal:  Methods Mol Biol       Date:  2019

6.  Cytosine deamination and base excision repair cause R-loop-induced CAG repeat fragility and instability in Saccharomyces cerevisiae.

Authors:  Xiaofeng A Su; Catherine H Freudenreich
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-18       Impact factor: 11.205

7.  DNA copy-number measurement of genome replication dynamics by high-throughput sequencing: the sort-seq, sync-seq and MFA-seq family.

Authors:  Dzmitry G Batrakou; Carolin A Müller; Rosemary H C Wilson; Conrad A Nieduszynski
Journal:  Nat Protoc       Date:  2020-02-12       Impact factor: 13.491

Review 8.  Ribonucleotide discrimination by translesion synthesis DNA polymerases.

Authors:  Alexandra Vaisman; Roger Woodgate
Journal:  Crit Rev Biochem Mol Biol       Date:  2018-07-04       Impact factor: 8.250

Review 9.  Processing ribonucleotides incorporated during eukaryotic DNA replication.

Authors:  Jessica S Williams; Scott A Lujan; Thomas A Kunkel
Journal:  Nat Rev Mol Cell Biol       Date:  2016-04-20       Impact factor: 94.444

Review 10.  The Balancing Act of Ribonucleotides in DNA.

Authors:  Susana M Cerritelli; Robert J Crouch
Journal:  Trends Biochem Sci       Date:  2016-03-17       Impact factor: 13.807
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