Literature DB >> 25729262

Data Interpretation in the Digital Age.

Sabina Leonelli1.   

Abstract

The consultation of internet databases and the related use of computer software to retrieve, visualise and model data have become key components of many areas of scientific research. This paper focuses on the relation of these developments to understanding the biology of organisms, and examines the conditions under which the evidential value of data posted online is assessed and interpreted by the researchers who access them, in ways that underpin and guide the use of those data to foster discovery. I consider the types of knowledge required to interpret data as evidence for claims about organisms, and in particular the relevance of knowledge acquired through physical interaction with actual organisms to assessing the evidential value of data found online. I conclude that familiarity with research in vivo is crucial to assessing the quality and significance of data visualised in silico; and that studying how biological data are disseminated, visualised, assessed and interpreted in the digital age provides a strong rationale for viewing scientific understanding as a social and distributed, rather than individual and localised, achievement.

Entities:  

Keywords:  automation; computer; data; databases; experimentation; organisms; understanding

Year:  2014        PMID: 25729262      PMCID: PMC4340525          DOI: 10.1162/POSC_a_00140

Source DB:  PubMed          Journal:  Perspect Sci        ISSN: 1063-6145


  20 in total

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2.  Re-thinking organisms: The impact of databases on model organism biology.

Authors:  Sabina Leonelli; Rachel A Ankeny
Journal:  Stud Hist Philos Biol Biomed Sci       Date:  2011-11-02

3.  Beyond the data deluge: data integration and bio-ontologies.

Authors:  Judith A Blake; Carol J Bult
Journal:  J Biomed Inform       Date:  2006-02-21       Impact factor: 6.317

4.  Rescue of old data offers lesson for particle physicists.

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Journal:  Science       Date:  2011-02-11       Impact factor: 47.728

5.  Philosophy of science. Machine science.

Authors:  James Evans; Andrey Rzhetsky
Journal:  Science       Date:  2010-07-23       Impact factor: 47.728

6.  When humans are the exception: cross-species databases at the interface of biological and clinical research.

Authors:  Sabina Leonelli
Journal:  Soc Stud Sci       Date:  2012-04       Impact factor: 3.885

7.  Big data: The future of biocuration.

Authors:  Doug Howe; Maria Costanzo; Petra Fey; Takashi Gojobori; Linda Hannick; Winston Hide; David P Hill; Renate Kania; Mary Schaeffer; Susan St Pierre; Simon Twigger; Owen White; Seung Yon Rhee
Journal:  Nature       Date:  2008-09-04       Impact factor: 49.962

8.  Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.

Authors:  Chris F Taylor; Dawn Field; Susanna-Assunta Sansone; Jan Aerts; Rolf Apweiler; Michael Ashburner; Catherine A Ball; Pierre-Alain Binz; Molly Bogue; Tim Booth; Alvis Brazma; Ryan R Brinkman; Adam Michael Clark; Eric W Deutsch; Oliver Fiehn; Jennifer Fostel; Peter Ghazal; Frank Gibson; Tanya Gray; Graeme Grimes; John M Hancock; Nigel W Hardy; Henning Hermjakob; Randall K Julian; Matthew Kane; Carsten Kettner; Christopher Kinsinger; Eugene Kolker; Martin Kuiper; Nicolas Le Novère; Jim Leebens-Mack; Suzanna E Lewis; Phillip Lord; Ann-Marie Mallon; Nishanth Marthandan; Hiroshi Masuya; Ruth McNally; Alexander Mehrle; Norman Morrison; Sandra Orchard; John Quackenbush; James M Reecy; Donald G Robertson; Philippe Rocca-Serra; Henry Rodriguez; Heiko Rosenfelder; Javier Santoyo-Lopez; Richard H Scheuermann; Daniel Schober; Barry Smith; Jason Snape; Christian J Stoeckert; Keith Tipton; Peter Sterk; Andreas Untergasser; Jo Vandesompele; Stefan Wiemann
Journal:  Nat Biotechnol       Date:  2008-08       Impact factor: 54.908

9.  The automation of science.

Authors:  Ross D King; Jem Rowland; Stephen G Oliver; Michael Young; Wayne Aubrey; Emma Byrne; Maria Liakata; Magdalena Markham; Pinar Pir; Larisa N Soldatova; Andrew Sparkes; Kenneth E Whelan; Amanda Clare
Journal:  Science       Date:  2009-04-03       Impact factor: 47.728

10.  Cancer informatics vision: caBIG.

Authors:  Andrew C von Eschenbach; Kenneth Buetow
Journal:  Cancer Inform       Date:  2007-02-06
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  7 in total

1.  A Distributed Computing Platform for fMRI Big Data Analytics.

Authors:  Milad Makkie; Xiang Li; Shannon Quinn; Binbin Lin; Jieping Ye; Geoffrey Mon; Tianming Liu
Journal:  IEEE Trans Big Data       Date:  2018-03-06

Review 2.  Big data, open science and the brain: lessons learned from genomics.

Authors:  Suparna Choudhury; Jennifer R Fishman; Michelle L McGowan; Eric T Juengst
Journal:  Front Hum Neurosci       Date:  2014-05-16       Impact factor: 3.169

3.  Exploring and visualizing multidimensional data in translational research platforms.

Authors:  William Dunn; Anita Burgun; Marie-Odile Krebs; Bastien Rance
Journal:  Brief Bioinform       Date:  2017-11-01       Impact factor: 11.622

4.  The effect of preregistration on trust in empirical research findings: results of a registered report.

Authors:  Sarahanne M Field; E-J Wagenmakers; Henk A L Kiers; Rink Hoekstra; Anja F Ernst; Don van Ravenzwaaij
Journal:  R Soc Open Sci       Date:  2020-04-01       Impact factor: 2.963

5.  Multi-year data from satellite- and ground-based sensors show details and scale matter in assessing climate's effects on wetland surface water, amphibians, and landscape conditions.

Authors:  Walt Sadinski; Alisa L Gallant; Mark Roth; Jesslyn Brown; Gabriel Senay; Wayne Brininger; Perry M Jones; Jason Stoker
Journal:  PLoS One       Date:  2018-09-07       Impact factor: 3.240

6.  Data Work: Meaning-Making in the Era of Data-Rich Medicine.

Authors:  Amelia Fiske; Barbara Prainsack; Alena Buyx
Journal:  J Med Internet Res       Date:  2019-07-09       Impact factor: 5.428

7.  Digitising biopiracy? The global governance of plant genetic resources in the age of digital sequencing information.

Authors:  Ryan Nehring
Journal:  Third World Q       Date:  2022-06-03
  7 in total

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