Literature DB >> 31240237

A Distributed Computing Platform for fMRI Big Data Analytics.

Milad Makkie1, Xiang Li2, Shannon Quinn1, Binbin Lin3, Jieping Ye3, Geoffrey Mon1, Tianming Liu1.   

Abstract

Since the BRAIN Initiative and Human Brain Project began, a few efforts have been made to address the computational challenges of neuroscience Big Data. The promises of these two projects were to model the complex interaction of brain and behavior and to understand and diagnose brain diseases by collecting and analyzing large quanitites of data. Archiving, analyzing, and sharing the growing neuroimaging datasets posed major challenges. New computational methods and technologies have emerged in the domain of Big Data but have not been fully adapted for use in neuroimaging. In this work, we introduce the current challenges of neuroimaging in a big data context. We review our efforts toward creating a data management system to organize the large-scale fMRI datasets, and present our novel algorithms/methods for the distributed fMRI data processing that employs Hadoop and Spark. Finally, we demonstrate the significant performance gains of our algorithms/methods to perform distributed dictionary learning.

Entities:  

Keywords:  apache-spark; big data analytics; distributed computing; fMRI; machine learning

Year:  2018        PMID: 31240237      PMCID: PMC6592627          DOI: 10.1109/TBDATA.2018.2811508

Source DB:  PubMed          Journal:  IEEE Trans Big Data        ISSN: 2332-7790


  45 in total

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Review 2.  What does fMRI tell us about neuronal activity?

Authors:  David J Heeger; David Ress
Journal:  Nat Rev Neurosci       Date:  2002-02       Impact factor: 34.870

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Authors:  Peter T Fox; Jack L Lancaster
Journal:  Nat Rev Neurosci       Date:  2002-04       Impact factor: 34.870

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Authors:  David E Rex; Jeffrey Q Ma; Arthur W Toga
Journal:  Neuroimage       Date:  2003-07       Impact factor: 6.556

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Authors:  Michael Elad; Michal Aharon
Journal:  IEEE Trans Image Process       Date:  2006-12       Impact factor: 10.856

Review 6.  Advances in functional and structural MR image analysis and implementation as FSL.

Authors:  Stephen M Smith; Mark Jenkinson; Mark W Woolrich; Christian F Beckmann; Timothy E J Behrens; Heidi Johansen-Berg; Peter R Bannister; Marilena De Luca; Ivana Drobnjak; David E Flitney; Rami K Niazy; James Saunders; John Vickers; Yongyue Zhang; Nicola De Stefano; J Michael Brady; Paul M Matthews
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

7.  The Extensible Neuroimaging Archive Toolkit: an informatics platform for managing, exploring, and sharing neuroimaging data.

Authors:  Daniel S Marcus; Timothy R Olsen; Mohana Ramaratnam; Randy L Buckner
Journal:  Neuroinformatics       Date:  2007

Review 8.  Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging.

Authors:  Michael D Fox; Marcus E Raichle
Journal:  Nat Rev Neurosci       Date:  2007-09       Impact factor: 34.870

Review 9.  What we can do and what we cannot do with fMRI.

Authors:  Nikos K Logothetis
Journal:  Nature       Date:  2008-06-12       Impact factor: 49.962

10.  Intrinsic signal changes accompanying sensory stimulation: functional brain mapping with magnetic resonance imaging.

Authors:  S Ogawa; D W Tank; R Menon; J M Ellermann; S G Kim; H Merkle; K Ugurbil
Journal:  Proc Natl Acad Sci U S A       Date:  1992-07-01       Impact factor: 11.205

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