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Literature DB >> 20651141

Philosophy of science. Machine science.

James Evans¹, Andrey Rzhetsky.

Abstract

Entities: Chemical Disease Gene Species

Mesh：

Year: 2010 PMID： 20651141 PMCID： PMC3647224 DOI： 10.1126/science.1189416

Source DB: PubMed Journal: Science ISSN： 0036-8075 Impact factor: 47.728

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18 in total

1. Association of genes to genetically inherited diseases using data mining.

Authors: Carolina Perez-Iratxeta; Peer Bork; Miguel A Andrade
Journal: Nat Genet Date: 2002-05-13 Impact factor: 38.330

2. Generating hypotheses by discovering implicit associations in the literature: a case report of a search for new potential therapeutic uses for thalidomide.

Authors: Marc Weeber; Rein Vos; Henny Klein; Lolkje T W De Jong-Van Den Berg; Alan R Aronson; Grietje Molema
Journal: J Am Med Inform Assoc Date: 2003-01-28 Impact factor: 4.497

3. Counterpoint: Data first.

Authors: Todd Golub
Journal: Nature Date: 2010-04-01 Impact factor: 49.962

4. Emergent behavior of growing knowledge about molecular interactions.

Authors: Murat Cokol; Ivan Iossifov; Chani Weinreb; Andrey Rzhetsky
Journal: Nat Biotechnol Date: 2005-10 Impact factor: 54.908

5. Medical literature as a potential source of new knowledge.

Authors: D R Swanson
Journal: Bull Med Libr Assoc Date: 1990-01

6. Fish oil, Raynaud's syndrome, and undiscovered public knowledge.

Authors: D R Swanson
Journal: Perspect Biol Med Date: 1986 Impact factor: 1.416

7. Hypothesis generation in signaling networks.

Authors: Derek A Ruths; Luay Nakhleh; M Sriram Iyengar; Shrikanth A G Reddy; Prahlad T Ram
Journal: J Comput Biol Date: 2006-11 Impact factor: 1.479

8. Automatic policing of biochemical annotations using genomic correlations.

Authors: Tzu-Lin Hsiao; Olga Revelles; Lifeng Chen; Uwe Sauer; Dennis Vitkup
Journal: Nat Chem Biol Date: 2009-11-22 Impact factor: 15.040

9. Extending the mutual information measure to rank inferred literature relationships.

Authors: Jonathan D Wren
Journal: BMC Bioinformatics Date: 2004-10-07 Impact factor: 3.169

10. Functional genomic hypothesis generation and experimentation by a robot scientist.

Authors: Ross D King; Kenneth E Whelan; Ffion M Jones; Philip G K Reiser; Christopher H Bryant; Stephen H Muggleton; Douglas B Kell; Stephen G Oliver
Journal: Nature Date: 2004-01-15 Impact factor: 49.962

8 in total

Review 1. Genetic design automation: engineering fantasy or scientific renewal?

Authors: Matthew W Lux; Brian W Bramlett; David A Ball; Jean Peccoud
Journal: Trends Biotechnol Date: 2011-10-14 Impact factor: 19.536

2. Ranking transitive chemical-disease inferences using local network topology in the comparative toxicogenomics database.

Authors: Benjamin L King; Allan Peter Davis; Michael C Rosenstein; Thomas C Wiegers; Carolyn J Mattingly
Journal: PLoS One Date: 2012-11-07 Impact factor: 3.240

Philosophy of science. Machine science.

1. Association of genes to genetically inherited diseases using data mining.

2. Generating hypotheses by discovering implicit associations in the literature: a case report of a search for new potential therapeutic uses for thalidomide.

3. Counterpoint: Data first.

4. Emergent behavior of growing knowledge about molecular interactions.

5. Medical literature as a potential source of new knowledge.

6. Fish oil, Raynaud's syndrome, and undiscovered public knowledge.

7. Hypothesis generation in signaling networks.

8. Automatic policing of biochemical annotations using genomic correlations.

9. Extending the mutual information measure to rank inferred literature relationships.

10. Functional genomic hypothesis generation and experimentation by a robot scientist.

Review 1. Genetic design automation: engineering fantasy or scientific renewal?

2. Ranking transitive chemical-disease inferences using local network topology in the comparative toxicogenomics database.

3. Web search queries can predict stock market volumes.

4. Eurekometrics: analyzing the nature of discovery.

5. Conceptions of Good Science in Our Data-Rich World.

6. Benchmarking diagnostic laboratory performance: Survey results for Germany, Austria, and Switzerland.

7. Data Interpretation in the Digital Age.

Review 8. Reverse engineering and identification in systems biology: strategies, perspectives and challenges.