Literature DB >> 25727148

The detection and discovery of glycan motifs in biological samples using lectins and antibodies: new methods and opportunities.

Huiyuan Tang1, Peter Hsueh1, Doron Kletter2, Marshall Bern2, Brian Haab3.   

Abstract

Recent research has uncovered unexpected ways that glycans contribute to biology, as well as new strategies for combatting disease using approaches involving glycans. To make full use of glycans for clinical applications, we need more detailed information on the location, nature, and dynamics of glycan expression in vivo. Such studies require the use of specimens acquired directly from patients. Effective studies of clinical specimens require low-volume assays, high precision measurements, and the ability to process many samples. Assays using affinity reagents-lectins and glycan-binding antibodies-can meet these requirements, but further developments are needed to make the methods routine and effective. Recent advances in the use of glycan-binding proteins involve improved determination of specificity using glycan arrays; the availability of databases for mining and analyzing glycan array data; lectin engineering methods; and the ability to quantitatively interpret lectin measurements. Here, we describe many of the challenges and opportunities involved in the application of these new approaches to the study of biological samples. The new tools hold promise for developing methods to improve the outcomes of patients afflicted with diseases characterized by aberrant glycan expression.
© 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Antibody–lectin sandwich arrays; Glycan arrays; Glycan-binding proteins; Glycans; GlycoSearch; Lectins

Mesh:

Substances:

Year:  2015        PMID: 25727148      PMCID: PMC4484597          DOI: 10.1016/bs.acr.2014.11.003

Source DB:  PubMed          Journal:  Adv Cancer Res        ISSN: 0065-230X            Impact factor:   6.242


  136 in total

1.  Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins.

Authors:  Hiroyuki Kaji; Haruna Saito; Yoshio Yamauchi; Takashi Shinkawa; Masato Taoka; Jun Hirabayashi; Ken-ichi Kasai; Nobuhiro Takahashi; Toshiaki Isobe
Journal:  Nat Biotechnol       Date:  2003-05-18       Impact factor: 54.908

Review 2.  Cell surface biology mediated by low affinity multivalent protein-glycan interactions.

Authors:  Brian E Collins; James C Paulson
Journal:  Curr Opin Chem Biol       Date:  2004-12       Impact factor: 8.822

Review 3.  Carbohydrate vaccines: developing sweet solutions to sticky situations?

Authors:  Rena D Astronomo; Dennis R Burton
Journal:  Nat Rev Drug Discov       Date:  2010-04       Impact factor: 84.694

4.  In vivo targeting of B-cell lymphoma with glycan ligands of CD22.

Authors:  Weihsu C Chen; Gladys C Completo; Darren S Sigal; Paul R Crocker; Alan Saven; James C Paulson
Journal:  Blood       Date:  2010-02-24       Impact factor: 22.113

Review 5.  Glycan microarrays for decoding the glycome.

Authors:  Cory D Rillahan; James C Paulson
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

6.  A motif-based analysis of glycan array data to determine the specificities of glycan-binding proteins.

Authors:  Andrew Porter; Tingting Yue; Lee Heeringa; Steven Day; Edward Suh; Brian B Haab
Journal:  Glycobiology       Date:  2009-11-29       Impact factor: 4.313

7.  Immunohistochemical study of mucin carbohydrates and core proteins in human pancreatic tumors.

Authors:  M Osako; S Yonezawa; B Siddiki; J Huang; J J Ho; Y S Kim; E Sato
Journal:  Cancer       Date:  1993-04-01       Impact factor: 6.860

8.  Global comparisons of lectin-glycan interactions using a database of analyzed glycan array data.

Authors:  Doron Kletter; Sudhir Singh; Marshall Bern; Brian B Haab
Journal:  Mol Cell Proteomics       Date:  2013-02-11       Impact factor: 5.911

9.  Epitope mapping of monoclonal antibodies using synthetic oligosaccharides uncovers novel aspects of immune recognition of the Psl exopolysaccharide of Pseudomonas aeruginosa.

Authors:  Huiqing Li; Kai-For Mo; Qun Wang; C Kendall Stover; Antonio DiGiandomenico; Geert-Jan Boons
Journal:  Chemistry       Date:  2013-11-18       Impact factor: 5.236

10.  LPS-induced galectin-3 oligomerization results in enhancement of neutrophil activation.

Authors:  Marise Lopes Fermino; Claudia Danella Polli; Karina Alves Toledo; Fu-Tong Liu; Dan K Hsu; Maria Cristina Roque-Barreira; Gabriela Pereira-da-Silva; Emerson Soares Bernardes; Lise Halbwachs-Mecarelli
Journal:  PLoS One       Date:  2011-10-21       Impact factor: 3.240

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  14 in total

Review 1.  Recent Advances in the Analysis of Complex Glycoproteins.

Authors:  Stefan Gaunitz; Gabe Nagy; Nicola L B Pohl; Milos V Novotny
Journal:  Anal Chem       Date:  2016-11-23       Impact factor: 6.986

2.  Targeting cancer-specific glycans by cyclic peptide lectinomimics.

Authors:  Maria C Rodriguez; Austin B Yongye; Mihael Cudic; Karina Martinez Mayorga; Enbo Liu; Barbara M Mueller; Jon Ainsley; Tatyana Karabencheva-Christova; Christo Z Christov; Mare Cudic; Predrag Cudic
Journal:  Amino Acids       Date:  2017-09-11       Impact factor: 3.520

Review 3.  Big-Data Glycomics: Tools to Connect Glycan Biosynthesis to Extracellular Communication.

Authors:  Benjamin P Kellman; Nathan E Lewis
Journal:  Trends Biochem Sci       Date:  2020-12-18       Impact factor: 13.807

4.  Carboxybetaine Modified Interface for Electrochemical Glycoprofiling of Antibodies Isolated from Human Serum.

Authors:  Tomas Bertok; Alena Šedivá; Jaroslav Filip; Marketa Ilcikova; Peter Kasak; Dusan Velic; Eduard Jane; Martina Mravcová; Jozef Rovenský; Pavol Kunzo; Peter Lobotka; Vasilij Šmatko; Alica Vikartovská; Jan Tkac
Journal:  Langmuir       Date:  2015-06-17       Impact factor: 3.882

Review 5.  Glycomic Approaches for the Discovery of Targets in Gastrointestinal Cancer.

Authors:  Stefan Mereiter; Meritxell Balmaña; Joana Gomes; Ana Magalhães; Celso A Reis
Journal:  Front Oncol       Date:  2016-03-09       Impact factor: 6.244

6.  Preclinical Analysis of JAA-F11, a Specific Anti-Thomsen-Friedenreich Antibody via Immunohistochemistry and In Vivo Imaging.

Authors:  Loukia G Karacosta; John C Fisk; Joseph Jessee; Swetha Tati; Bradley Turner; Diala Ghazal; Rachel Ludwig; Holly Johnson; Julia Adams; Munawwar Sajjad; Steven Koury; Rene Roy; James R Olson; Kate Rittenhouse-Olson
Journal:  Transl Oncol       Date:  2018-02-22       Impact factor: 4.243

Review 7.  Chemical Glycoproteomics.

Authors:  Krishnan K Palaniappan; Carolyn R Bertozzi
Journal:  Chem Rev       Date:  2016-11-18       Impact factor: 60.622

8.  Two-Dimensional N-Glycan Distribution Mapping of Hepatocellular Carcinoma Tissues by MALDI-Imaging Mass Spectrometry.

Authors:  Thomas W Powers; Stephanie Holst; Manfred Wuhrer; Anand S Mehta; Richard R Drake
Journal:  Biomolecules       Date:  2015-10-15

Review 9.  Hijacking the Hexosamine Biosynthetic Pathway to Promote EMT-Mediated Neoplastic Phenotypes.

Authors:  Kekoa Taparra; Phuoc T Tran; Natasha E Zachara
Journal:  Front Oncol       Date:  2016-04-18       Impact factor: 6.244

Review 10.  Application of cancer-associated glycoforms and glycan-binding probes to an in vitro diagnostic multivariate index assay for precise diagnoses of cancer.

Authors:  Jeong Gu Kang; Jeong-Heon Ko; Yong-Sam Kim
Journal:  Proteomics       Date:  2016-05-11       Impact factor: 3.984

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