Literature DB >> 25726471

Computational and experimental studies of reassociating RNA/DNA hybrids containing split functionalities.

Kirill A Afonin1, Eckart Bindewald2, Maria Kireeva3, Bruce A Shapiro4.   

Abstract

Recently, we developed a novel technique based on RNA/DNA hybrid reassociation that allows conditional activation of different split functionalities inside diseased cells and in vivo. We further expanded this idea to permit simultaneous activation of multiple different functions in a fully controllable fashion. In this chapter, we discuss some novel computational approaches and experimental techniques aimed at the characterization, design, and production of reassociating RNA/DNA hybrids containing split functionalities. We also briefly describe several experimental techniques that can be used to test these hybrids in vitro and in vivo. 2015 Published by Elsevier Inc.

Entities:  

Keywords:  RNA/DNA hybrids; Specific gene silencing; Split functionalities; Thermodynamic of RNA/DNA hybrids reassociation; siRNA delivery

Mesh:

Substances:

Year:  2015        PMID: 25726471      PMCID: PMC6319920          DOI: 10.1016/bs.mie.2014.10.058

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  9 in total

1.  Intracellular Reassociation of RNA-DNA Hybrids that Activates RNAi in HIV-Infected Cells.

Authors:  Angelica N Martins; Weina Ke; Vaishnavi Jawahar; Morriah Striplin; Caryn Striplin; Eric O Freed; Kirill A Afonin
Journal:  Methods Mol Biol       Date:  2017

2.  The Use of Minimal RNA Toeholds to Trigger the Activation of Multiple Functionalities.

Authors:  Kirill A Afonin; Mathias Viard; Philip Tedbury; Eckart Bindewald; Lorena Parlea; Marshall Howington; Melissa Valdman; Alizah Johns-Boehme; Cara Brainerd; Eric O Freed; Bruce A Shapiro
Journal:  Nano Lett       Date:  2016-02-29       Impact factor: 11.189

3.  RNA and DNA nanoparticles for triggering RNA interference.

Authors:  Ziad El Tannir; Kirill A Afonin; Bruce A Shapiro
Journal:  RNA Dis       Date:  2015-11-29

Review 4.  Cellular Delivery of RNA Nanoparticles.

Authors:  Lorena Parlea; Anu Puri; Wojciech Kasprzak; Eckart Bindewald; Paul Zakrevsky; Emily Satterwhite; Kenya Joseph; Kirill A Afonin; Bruce A Shapiro
Journal:  ACS Comb Sci       Date:  2016-08-26       Impact factor: 3.784

5.  Combination of Nucleic Acid and Mesoporous Silica Nanoparticles: Optimization and Therapeutic Performance In Vitro.

Authors:  Ridhima Juneja; Hemapriyadarshini Vadarevu; Justin Halman; Mubin Tarannum; Lauren Rackley; Jacob Dobbs; Jose Marquez; Morgan Chandler; Kirill Afonin; Juan L Vivero-Escoto
Journal:  ACS Appl Mater Interfaces       Date:  2020-08-18       Impact factor: 9.229

Review 6.  Advancement of the Emerging Field of RNA Nanotechnology.

Authors:  Daniel Jasinski; Farzin Haque; Daniel W Binzel; Peixuan Guo
Journal:  ACS Nano       Date:  2017-02-07       Impact factor: 15.881

7.  RNA as a stable polymer to build controllable and defined nanostructures for material and biomedical applications.

Authors:  Hui Li; Taek Lee; Thomas Dziubla; Fengmei Pi; Sijin Guo; Jing Xu; Chan Li; Farzin Haque; Xing-Jie Liang; Peixuan Guo
Journal:  Nano Today       Date:  2015-10-01       Impact factor: 20.722

Review 8.  Nucleic Acid Nanoparticles at a Crossroads of Vaccines and Immunotherapies.

Authors:  Marina A Dobrovolskaia
Journal:  Molecules       Date:  2019-12-17       Impact factor: 4.411

Review 9.  Modulating Immune Response with Nucleic Acid Nanoparticles.

Authors:  Jake K Durbin; Daniel K Miller; Julia Niekamp; Emil F Khisamutdinov
Journal:  Molecules       Date:  2019-10-17       Impact factor: 4.411

  9 in total

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