Literature DB >> 28730446

Intracellular Reassociation of RNA-DNA Hybrids that Activates RNAi in HIV-Infected Cells.

Angelica N Martins1, Weina Ke2, Vaishnavi Jawahar1,2, Morriah Striplin2, Caryn Striplin2, Eric O Freed3, Kirill A Afonin4,5,6.   

Abstract

Human immunodeficiency virus Type 1 (HIV-1) is the major cause of acquired immune deficiency syndrome (AIDS). In 2014, it was estimated that 1.2 million people died from AIDS-related illnesses. RNA interference-based therapy to block HIV replication is a field that, as of now, is without any FDA-approved drugs available for clinical use. In this chapter we describe a protocol for testing and utilizing a new approach that relies on reassociation of RNA-DNA hybrids activating RNAi and blocking HIV replication in human cells.

Entities:  

Keywords:  Dicer substrate RNA; HIV-1; Hybrids reassociation; RNA interference; RNA nanotechnology; RNA–DNA hybrids

Mesh:

Substances:

Year:  2017        PMID: 28730446      PMCID: PMC6941940          DOI: 10.1007/978-1-4939-7138-1_18

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  27 in total

1.  Computational and experimental studies of reassociating RNA/DNA hybrids containing split functionalities.

Authors:  Kirill A Afonin; Eckart Bindewald; Maria Kireeva; Bruce A Shapiro
Journal:  Methods Enzymol       Date:  2015-02-10       Impact factor: 1.600

Review 2.  Substrate selectivity of exportin 5 and Dicer in the biogenesis of microRNAs.

Authors:  E Lund; J E Dahlberg
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2006

3.  Fluorescent monitoring of RNA assembly and processing using the split-spinach aptamer.

Authors:  Tucker A Rogers; Grant E Andrews; Luc Jaeger; Wade W Grabow
Journal:  ACS Synth Biol       Date:  2014-05-08       Impact factor: 5.110

4.  Methods for the study of HIV-1 assembly.

Authors:  Abdul A Waheed; Akira Ono; Eric O Freed
Journal:  Methods Mol Biol       Date:  2009

5.  Computational and experimental characterization of RNA cubic nanoscaffolds.

Authors:  Kirill A Afonin; Wojciech Kasprzak; Eckart Bindewald; Praneet S Puppala; Alex R Diehl; Kenneth T Hall; Tae Jin Kim; Michael T Zimmermann; Robert L Jernigan; Luc Jaeger; Bruce A Shapiro
Journal:  Methods       Date:  2013-11-01       Impact factor: 3.608

6.  Development of Therapeutic-Grade Small Interfering RNAs by Chemical Engineering.

Authors:  Jesper B Bramsen; Jørgen Kjems
Journal:  Front Genet       Date:  2012-08-20       Impact factor: 4.599

7.  Functional polarity is introduced by Dicer processing of short substrate RNAs.

Authors:  Scott D Rose; Dong-Ho Kim; Mohammed Amarzguioui; Jeremy D Heidel; Michael A Collingwood; Mark E Davis; John J Rossi; Mark A Behlke
Journal:  Nucleic Acids Res       Date:  2005-07-26       Impact factor: 16.971

8.  Triggering of RNA interference with RNA-RNA, RNA-DNA, and DNA-RNA nanoparticles.

Authors:  Kirill A Afonin; Mathias Viard; Ioannis Kagiampakis; Christopher L Case; Marina A Dobrovolskaia; Jen Hofmann; Ashlee Vrzak; Maria Kireeva; Wojciech K Kasprzak; Vineet N KewalRamani; Bruce A Shapiro
Journal:  ACS Nano       Date:  2014-12-18       Impact factor: 15.881

9.  Computing in mammalian cells with nucleic acid strand exchange.

Authors:  Benjamin Groves; Yuan-Jyue Chen; Chiara Zurla; Sergii Pochekailov; Jonathan L Kirschman; Philip J Santangelo; Georg Seelig
Journal:  Nat Nanotechnol       Date:  2015-12-21       Impact factor: 39.213

10.  Co-transcriptional production of RNA-DNA hybrids for simultaneous release of multiple split functionalities.

Authors:  Kirill A Afonin; Ravi Desai; Mathias Viard; Maria L Kireeva; Eckart Bindewald; Christopher L Case; Anna E Maciag; Wojciech K Kasprzak; Taejin Kim; Alison Sappe; Marissa Stepler; Vineet N Kewalramani; Mikhail Kashlev; Robert Blumenthal; Bruce A Shapiro
Journal:  Nucleic Acids Res       Date:  2013-11-04       Impact factor: 16.971

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  1 in total

1.  RNA-DNA fibers and polygons with controlled immunorecognition activate RNAi, FRET and transcriptional regulation of NF-κB in human cells.

Authors:  Weina Ke; Enping Hong; Renata F Saito; Maria Cristina Rangel; Jian Wang; Mathias Viard; Melina Richardson; Emil F Khisamutdinov; Martin Panigaj; Nikolay V Dokholyan; Roger Chammas; Marina A Dobrovolskaia; Kirill A Afonin
Journal:  Nucleic Acids Res       Date:  2019-02-20       Impact factor: 16.971

  1 in total

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