Literature DB >> 17245489

Regulating gene expression with light-activated oligonucleotides.

XinJing Tang1, Ivan J Dmochowski.   

Abstract

Since the development of light-responsive amino acids, the activity of numerous biomolecules has been photomodulated in biochemical, biophysical, and cellular assays. Biological problems of even greater complexity motivate the development of quantitative methods for controlling gene activity with high spatial and temporal resolution, using light as an external trigger. Photoresponsive DNA and RNA oligonucleotides would optimally serve this purpose, but have proven difficult to expand from proofs-of-concept to in vivo experiments. Until recently, the development of this technology was limited by the synthesis of oligonucleotides whose function could be significantly modulated with near-UV light. New synthetic protocols and strategies for both up- and down-regulating gene activity finally make it possible to address biological considerations. In the near future, we can expect photoresponsive DNA and RNA molecules that are relatively non-toxic, nuclease-resistant, and maintain their specificity and activity in vivo. Quantitative, laser-initiated methods for controlling DNA and RNA function will illuminate new areas in cell and developmental biology.

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Year:  2006        PMID: 17245489     DOI: 10.1039/b614349k

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  36 in total

1.  Tightening up the structure, lighting up the pathway: Application of molecular constraints and light to manipulate protein folding, self-assembly and function.

Authors:  Beatrice N Markiewicz; Robert M Culik; Feng Gai
Journal:  Sci China Chem       Date:  2014-12       Impact factor: 9.445

2.  Photochemical DNA activation.

Authors:  Hrvoje Lusic; Douglas D Young; Mark O Lively; Alexander Deiters
Journal:  Org Lett       Date:  2007-04-21       Impact factor: 6.005

3.  Light-triggered polymerase chain reaction.

Authors:  Douglas D Young; Wesleigh F Edwards; Hrvoje Lusic; Mark O Lively; Alexander Deiters
Journal:  Chem Commun (Camb)       Date:  2007-11-14       Impact factor: 6.222

4.  Remote activation of biomolecules in deep tissues using near-infrared-to-UV upconversion nanotransducers.

Authors:  Muthu Kumara Gnanasammandhan Jayakumar; Niagara Muhammad Idris; Yong Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-10       Impact factor: 11.205

Review 5.  Illuminating the chemistry of life: design, synthesis, and applications of "caged" and related photoresponsive compounds.

Authors:  Hsien-Ming Lee; Daniel R Larson; David S Lawrence
Journal:  ACS Chem Biol       Date:  2009-06-19       Impact factor: 5.100

6.  Photomodulating RNA cleavage using photolabile circular antisense oligodeoxynucleotides.

Authors:  XinJing Tang; Meng Su; LiLi Yu; Cong Lv; Jie Wang; ZhongJin Li
Journal:  Nucleic Acids Res       Date:  2010-02-17       Impact factor: 16.971

7.  Light-activation of gene function in mammalian cells via ribozymes.

Authors:  Douglas D Young; R Aaron Garner; Jeffrey A Yoder; Alexander Deiters
Journal:  Chem Commun (Camb)       Date:  2008-12-02       Impact factor: 6.222

8.  Restriction enzyme-free mutagenesis via the light regulation of DNA polymerization.

Authors:  Douglas D Young; Hrvoje Lusic; Mark O Lively; Alexander Deiters
Journal:  Nucleic Acids Res       Date:  2009-03-17       Impact factor: 16.971

9.  Versatile synthesis and rational design of caged morpholinos.

Authors:  Xiaohu Ouyang; Ilya A Shestopalov; Surajit Sinha; Genhua Zheng; Cameron L W Pitt; Wen-Hong Li; Andrew J Olson; James K Chen
Journal:  J Am Chem Soc       Date:  2009-09-23       Impact factor: 15.419

10.  Dependence of aptamer activity on opposed terminal extensions: improvement of light-regulation efficiency.

Authors:  Maximilian C R Buff; Florian Schäfer; Bernhard Wulffen; Jens Müller; Bernd Pötzsch; Alexander Heckel; Günter Mayer
Journal:  Nucleic Acids Res       Date:  2009-12-08       Impact factor: 16.971

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