Literature DB >> 25719969

Material properties of biofilms-a review of methods for understanding permeability and mechanics.

Nicole Billings1, Alona Birjiniuk, Tahoura S Samad, Patrick S Doyle, Katharina Ribbeck.   

Abstract

Microorganisms can form biofilms, which are multicellular communities surrounded by a hydrated extracellular matrix of polymers. Central properties of the biofilm are governed by this extracellular matrix, which provides mechanical stability to the 3D biofilm structure, regulates the ability of the biofilm to adhere to surfaces, and determines the ability of the biofilm to adsorb gases, solutes, and foreign cells. Despite their critical relevance for understanding and eliminating of biofilms, the materials properties of the extracellular matrix are understudied. Here, we offer the reader a guide to current technologies that can be utilized to specifically assess the permeability and mechanical properties of the biofilm matrix and its interacting components. In particular, we highlight technological advances in instrumentation and interactions between multiple disciplines that have broadened the spectrum of methods available to conduct these studies. We review pioneering work that furthers our understanding of the material properties of biofilms.

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Year:  2015        PMID: 25719969      PMCID: PMC4504244          DOI: 10.1088/0034-4885/78/3/036601

Source DB:  PubMed          Journal:  Rep Prog Phys        ISSN: 0034-4885


  119 in total

1.  Bacterial swimmers that infiltrate and take over the biofilm matrix.

Authors:  Ali Houry; Michel Gohar; Julien Deschamps; Ekaterina Tischenko; Stéphane Aymerich; Alexandra Gruss; Romain Briandet
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-05       Impact factor: 11.205

2.  Atomic force microscope.

Authors: 
Journal:  Phys Rev Lett       Date:  1986-03-03       Impact factor: 9.161

3.  Quantifying diffusion in a biofilm of Streptococcus mutans.

Authors:  Zeshi Zhang; Elena Nadezhina; Kevin J Wilkinson
Journal:  Antimicrob Agents Chemother       Date:  2010-12-28       Impact factor: 5.191

4.  Static and dynamic errors in particle tracking microrheology.

Authors:  Thierry Savin; Patrick S Doyle
Journal:  Biophys J       Date:  2004-11-08       Impact factor: 4.033

5.  Microelectrode measurements of the activity distribution in nitrifying bacterial aggregates.

Authors:  D de Beer; J C van den Heuvel; S P Ottengraf
Journal:  Appl Environ Microbiol       Date:  1993-02       Impact factor: 4.792

6.  Pseudomonas aeruginosa Psl is a galactose- and mannose-rich exopolysaccharide.

Authors:  Luyan Ma; Haiping Lu; April Sprinkle; Matthew R Parsek; Daniel J Wozniak
Journal:  J Bacteriol       Date:  2007-07-13       Impact factor: 3.490

7.  Liquid transport facilitated by channels in Bacillus subtilis biofilms.

Authors:  James N Wilking; Vasily Zaburdaev; Michael De Volder; Richard Losick; Michael P Brenner; David A Weitz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-27       Impact factor: 11.205

8.  Measurement of local diffusion coefficients in biofilms by microinjection and confocal microscopy.

Authors:  D de Beer; P Stoodley; Z Lewandowski
Journal:  Biotechnol Bioeng       Date:  1997-01-20       Impact factor: 4.530

9.  The extracellular matrix Component Psl provides fast-acting antibiotic defense in Pseudomonas aeruginosa biofilms.

Authors:  Nicole Billings; MariaRamirez Millan; Marina Caldara; Roberto Rusconi; Yekaterina Tarasova; Roman Stocker; Katharina Ribbeck
Journal:  PLoS Pathog       Date:  2013-08-08       Impact factor: 6.823

10.  Microrheology of bacterial biofilms in vitro: Staphylococcus aureus and Pseudomonas aeruginosa.

Authors:  S S Rogers; C van der Walle; T A Waigh
Journal:  Langmuir       Date:  2008-12-02       Impact factor: 3.882

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  43 in total

1.  Luminescent Nanosensors for Ratiometric Monitoring of Three-Dimensional Oxygen Gradients in Laboratory and Clinical Pseudomonas aeruginosa Biofilms.

Authors:  Megan P Jewell; Anne A Galyean; J Kirk Harris; Edith T Zemanick; Kevin J Cash
Journal:  Appl Environ Microbiol       Date:  2019-10-01       Impact factor: 4.792

2.  Selective Inhibition of Streptococci Biofilm Growth via a Hydroxylated Azobenzene Coating.

Authors:  Dylan I Mori; Michael J Schurr; Devatha P Nair
Journal:  Adv Mater Interfaces       Date:  2020-06-08       Impact factor: 6.147

Review 3.  Continuum and discrete approach in modeling biofilm development and structure: a review.

Authors:  M R Mattei; L Frunzo; B D'Acunto; Y Pechaud; F Pirozzi; G Esposito
Journal:  J Math Biol       Date:  2017-07-24       Impact factor: 2.259

4.  Minimizing biases associated with tracking analysis of submicron particles in heterogeneous biological fluids.

Authors:  Ying-Ying Wang; Kenetta L Nunn; Dimple Harit; Scott A McKinley; Samuel K Lai
Journal:  J Control Release       Date:  2015-10-18       Impact factor: 9.776

Review 5.  Biofilms: an emergent form of bacterial life.

Authors:  Hans-Curt Flemming; Jost Wingender; Ulrich Szewzyk; Peter Steinberg; Scott A Rice; Staffan Kjelleberg
Journal:  Nat Rev Microbiol       Date:  2016-08-11       Impact factor: 60.633

6.  A microfluidic method and custom model for continuous, non-intrusive biofilm viscosity measurements under different nutrient conditions.

Authors:  J Greener; M Parvinzadeh Gashti; A Eslami; M P Zarabadi; S M Taghavi
Journal:  Biomicrofluidics       Date:  2016-11-18       Impact factor: 2.800

7.  Arrested fungal biofilms as low-modulus structural bio-composites: Water holds the key.

Authors:  R Aravinda Narayanan; Asma Ahmed
Journal:  Eur Phys J E Soft Matter       Date:  2019-10-23       Impact factor: 1.890

8.  Structure, Mechanics, and Instability of Fibrin Clot Infected with Staphylococcus epidermidis.

Authors:  Tianhui Maria Ma; J Scott VanEpps; Michael J Solomon
Journal:  Biophys J       Date:  2017-11-07       Impact factor: 4.033

Review 9.  Biophysical processes supporting the diversity of microbial life in soil.

Authors:  Robin Tecon; Dani Or
Journal:  FEMS Microbiol Rev       Date:  2017-09-01       Impact factor: 16.408

Review 10.  Surviving as a Community: Antibiotic Tolerance and Persistence in Bacterial Biofilms.

Authors:  Jing Yan; Bonnie L Bassler
Journal:  Cell Host Microbe       Date:  2019-07-10       Impact factor: 21.023

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