Literature DB >> 28741178

Continuum and discrete approach in modeling biofilm development and structure: a review.

M R Mattei1, L Frunzo2, B D'Acunto1, Y Pechaud3, F Pirozzi4, G Esposito5.   

Abstract

The scientific community has recognized that almost 99% of the microbial life on earth is represented by biofilms. Considering the impacts of their sessile lifestyle on both natural and human activities, extensive experimental activity has been carried out to understand how biofilms grow and interact with the environment. Many mathematical models have also been developed to simulate and elucidate the main processes characterizing the biofilm growth. Two main mathematical approaches for biomass representation can be distinguished: continuum and discrete. This review is aimed at exploring the main characteristics of each approach. Continuum models can simulate the biofilm processes in a quantitative and deterministic way. However, they require a multidimensional formulation to take into account the biofilm spatial heterogeneity, which makes the models quite complicated, requiring significant computational effort. Discrete models are more recent and can represent the typical multidimensional structural heterogeneity of biofilm reflecting the experimental expectations, but they generate computational results including elements of randomness and introduce stochastic effects into the solutions.

Entities:  

Keywords:  Biofilm; Biomass representation; Continuum models; Discrete models

Mesh:

Year:  2017        PMID: 28741178     DOI: 10.1007/s00285-017-1165-y

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  170 in total

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Authors:  S W Hermanowicz
Journal:  Math Biosci       Date:  2001-01       Impact factor: 2.144

Review 2.  Biofilms as complex differentiated communities.

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Journal:  Annu Rev Microbiol       Date:  2002-01-30       Impact factor: 15.500

3.  Adaptive responses to antimicrobial agents in biofilms.

Authors:  Barbara Szomolay; Isaac Klapper; Jack Dockery; Phil S Stewart
Journal:  Environ Microbiol       Date:  2005-08       Impact factor: 5.491

4.  One-dimensional mixed-culture biofilm model considering different space occupancies of particulate components.

Authors:  Min Woo Lee; Jong Moon Park
Journal:  Water Res       Date:  2007-06-15       Impact factor: 11.236

5.  Multicomponent hydrodynamic model for heterogeneous biofilms: two-dimensional numerical simulations of growth and interaction with flows.

Authors:  Brandon Lindley; Qi Wang; Tianyu Zhang
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-03-09

6.  An improved cellular automaton method to model multispecies biofilms.

Authors:  Youneng Tang; Albert J Valocchi
Journal:  Water Res       Date:  2013-07-06       Impact factor: 11.236

7.  Modeling multispecies biofilms including new bacterial species invasion.

Authors:  B D'Acunto; L Frunzo; I Klapper; M R Mattei
Journal:  Math Biosci       Date:  2014-11-20       Impact factor: 2.144

8.  Mathematical analysis of a quorum sensing induced biofilm dispersal model and numerical simulation of hollowing effects.

Authors:  Blessing O Emerenini; Stefanie Sonner; Hermann J Eberl
Journal:  Math Biosci Eng       Date:  2017-06-01       Impact factor: 2.080

Review 9.  Modeling of biofilm systems: a review.

Authors:  Harald Horn; Susanne Lackner
Journal:  Adv Biochem Eng Biotechnol       Date:  2014       Impact factor: 2.635

10.  Biofilm accumulation model that predicts antibiotic resistance of Pseudomonas aeruginosa biofilms.

Authors:  P S Stewart
Journal:  Antimicrob Agents Chemother       Date:  1994-05       Impact factor: 5.191

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  10 in total

1.  A thin-film extensional flow model for biofilm expansion by sliding motility.

Authors:  Alexander Tam; J Edward F Green; Sanjeeva Balasuriya; Ee Lin Tek; Jennifer M Gardner; Joanna F Sundstrom; Vladimir Jiranek; Benjamin J Binder
Journal:  Proc Math Phys Eng Sci       Date:  2019-09-04       Impact factor: 2.704

Review 2.  Microbial biofilm ecology, in silico study of quorum sensing receptor-ligand interactions and biofilm mediated bioremediation.

Authors:  Biji Balan; Amit S Dhaulaniya; Diksha A Varma; Kushneet K Sodhi; Mohit Kumar; Manisha Tiwari; Dileep Kumar Singh
Journal:  Arch Microbiol       Date:  2020-08-12       Impact factor: 2.552

3.  Development and Quantitation of Pseudomonas aeruginosa Biofilms after in vitro Cultivation in Flow-reactors.

Authors:  Yingdan Zhang; Jingru Zhao; Hang Cheng; Jing Wang; Liang Yang; Haihua Liang
Journal:  Bio Protoc       Date:  2021-08-20

4.  Computational and Experimental Investigation of Biofilm Disruption Dynamics Induced by High-Velocity Gas Jet Impingement.

Authors:  Lledó Prades; Stefania Fabbri; Antonio D Dorado; Xavier Gamisans; Paul Stoodley; Cristian Picioreanu
Journal:  mBio       Date:  2020-01-07       Impact factor: 7.867

5.  Mechanics of biofilms formed of bacteria with fimbriae appendages.

Authors:  Xing Jin; Jeffrey S Marshall
Journal:  PLoS One       Date:  2020-12-08       Impact factor: 3.240

6.  Multiscale Modelling of De Novo Anaerobic Granulation.

Authors:  A Tenore; F Russo; M R Mattei; B D'Acunto; G Collins; L Frunzo
Journal:  Bull Math Biol       Date:  2021-11-06       Impact factor: 1.758

Review 7.  Exploring the role of microbial biofilm for industrial effluents treatment.

Authors:  Indranil Chattopadhyay; Rajesh Banu J; T M Mohamed Usman; Sunita Varjani
Journal:  Bioengineered       Date:  2022-03       Impact factor: 3.269

Review 8.  Exploring the Function of Quorum Sensing Regulated Biofilms in Biological Wastewater Treatment: A Review.

Authors:  Sania Sahreen; Hamid Mukhtar; Kálmán Imre; Adriana Morar; Viorel Herman; Sundas Sharif
Journal:  Int J Mol Sci       Date:  2022-08-28       Impact factor: 6.208

9.  Biofilm viscoelasticity and nutrient source location control biofilm growth rate, migration rate, and morphology in shear flow.

Authors:  Hoa Nguyen; Abraham Ybarra; Hakan Başağaoğlu; Orrin Shindell
Journal:  Sci Rep       Date:  2021-08-09       Impact factor: 4.379

10.  Four species of bacteria deterministically assemble to form a stable biofilm in a millifluidic channel.

Authors:  A Monmeyran; W Benyoussef; P Thomen; N Dahmane; A Baliarda; M Jules; S Aymerich; N Henry
Journal:  NPJ Biofilms Microbiomes       Date:  2021-08-05       Impact factor: 7.290

  10 in total

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