| Literature DB >> 25709466 |
Meng Wang1, Xi-Jing Wang1, Yun-Feng Ma2, Xiao-Bin Ma1, Zhi-Ming Dai3, Ye Lv1, Shuai Lin1, Xing-Han Liu1, Peng-Tao Yang1, Zhi-Jun Dai4.
Abstract
BACKGROUND: Previous studies suggested genetic variations in PSCA (prostate stem cell antigen) may confer the susceptibility of cancer. Many case-control studies have reported the relationship between PSCA rs2294008 C > T polymorphism and cancer, especially gastric cancer and bladder cancer. However, the results are inconsistent. This meta-analysis is aimed at evaluating the association of rs2294008 polymorphism with cancer risk.Entities:
Keywords: SNPs; meta-analysis; prostate stem cell antigen; risk; single nucleotide polymorphisms
Year: 2015 PMID: 25709466 PMCID: PMC4335611 DOI: 10.2147/TCRM.S77089
Source DB: PubMed Journal: Ther Clin Risk Manag ISSN: 1176-6336 Impact factor: 2.423
Figure 1Flow chart of study selection.
Abbreviation: CNKI, Chinese National Knowledge Infrastructure.
Characteristics of studies included in the meta-analysis
| Study | Year | Country | Ethnicity | Study design | Genotyping method | Source of control | Cancer type | Sample size (case/control) |
|---|---|---|---|---|---|---|---|---|
| Dai et al | 2014 | People’s Republic of China | Asian | CC | TaqMan | Population | EC | 2,083/2,220 |
| Wang et al | 2014 | People’s Republic of China | Asian | CC | TaqMan | Population | BC | 1,210/1,008 |
| Ma et al | 2013 | People’s Republic of China | Asian | CC | iPLEX | Population | BC | 184/962 |
| Zhao et al | 2013 | People’s Republic of China | Asian | CC | DHPLC | Population | GC | 717/951 |
| Rizzato et al | 2013 | Venezuela | Mixed | CC | TaqMan | Hospital | GC | 180/1,061 |
| Rai et al | 2013 | India | Asian | CC | TaqMan | Population | GBC | 405/247 |
| Ono et al | 2013 | Japan | Asian | CC | TaqMan | Hospital | GBC | 44/173 |
| Fu et al | 2012 | Europe | Caucasian | CC | TaqMan | Population | BC | 5,393/7,324 |
| Li et al | 2012 | People’s Republic of China | Asian | CC | iPLEX | Hospital | GC | 300/300 |
| Smith et al | 2012 | Scotland | Caucasian | CC | TaqMan | Hospital | CRC | 77/804 |
| Sala et al | 2012 | Europe | Caucasian | CC | SNP array | Population | GC | 411/1,530 |
| Zhao et al | 2012 | People’s Republic of China | Asian | CC | DHPLC | Population | GC | 185/200 |
| Tanikawa et al | 2012 | Japan | Asian | CC | SNP array | Hospital | GC | 2,300/16,567 |
| Song et al | 2011 | Korea | Asian | CC | PCR-RFLP | Hospital | GC | 3,245/1,700 |
| Zeng et al | 2011 | People’s Republic of China | Asian | CC | PCR-RFLP | Hospital | GC | 460/549 |
| Lochhead et al | 2011 | Poland | Caucasian | CC | TaqMan | Population | GC | 312/383 |
| Lochhead et al | 2011 | USA | Caucasian | CC | TaqMan | Population | Upper GIC | 468*/211 |
| Wang et al | 2010 | People’s Republic of China | Asian | CC | PCR-RFLP | Hospital | BC | 581/580 |
| Ou et al | 2010 | People’s Republic of China | Asian | CC | PCR/LDR | Hospital | GC | 196/246 |
| Lu et al | 2010 | People’s Republic of China | Asian | CC | PCR-RFLP | Population | GC | 1,053/1,100 |
| Chen et al | 2010 | People’s Republic of China | Asian | CC | PCR-RFLP | Hospital | GC | 460/549 |
| Wu et al | 2009 | Europe | Caucasian | CC | TaqMan | Population | BC | 5,038/9,363 |
| Matsuo et al | 2009 | Japan | Asian | CC | TaqMan | Hospital | GC | 708/708 |
| Wu et al | 2009 | People’s Republic of China | Asian | CC | PCR-RFLP | Population | GC | 1,736/1,020 |
| Sakamoto et al | 2008 | Japan | Asian | CC | TaqMan | Population | GC | 1,531/1,399 |
| Sakamoto et al | 2008 | Korea | Asian | CC | TaqMan | Population | GC | 871/390 |
Notes:
Including 309 gastric cancer cases and 159 esophageal cancer cases. Lochhead et al31a refers the study evaluated association of the rs2294008 polymorphism with gastric cancer risk and Lochhead et al31b refers to the study evaluated association of the rs2294008 polymorphism with upper GI cancer risk. Sakamoto et al9a refers to the study evaluated association of the rs2294008 with gastric cancer types in Japan and Sakamoto et al9b refers to the study evaluated association of the rs2294008 with gastric cancer types in Korea.
Abbreviations: BC, bladder cancer; CC, case–control; CRC, colorectal cancer; DHPLC, denaturing high-performance liquid chromatography; EC, esophageal cancer; GBC, gallbladder cancer; GIC, gastrointestinal cancers; GC, gastric cancer; LDR, ligation detection reaction; PCR, polymerase chain reaction; RFLP, restriction fragment length polymorphism; SNP, single nucleotide polymorphism.
PSCA rs2294008 polymorphism genotype distribution and allele frequency in cases and controls
| Study | Genotype (N)
| Allele frequency (N)
| MAF | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Case
| Control
| Case
| Control
| ||||||||||
| Total | CC | CT | TT | Total | CC | CT | TT | C | T | C | T | ||
| Zhao et al | 717 | 275 | 342 | 100 | 951 | 465 | 401 | 85 | 892 | 542 | 1,331 | 571 | 0.38 |
| Rizzato et al | 180 | 23 | 86 | 69 | 1,061 | 231 | 507 | 319 | 132 | 224 | 969 | 1,145 | 0.63 |
| Li et al | 300 | 124 | 141 | 35 | 300 | 168 | 111 | 21 | 389 | 211 | 447 | 153 | 0.35 |
| Sala et al | 411 | 93 | 198 | 118 | 1,530 | 491 | 714 | 310 | 384 | 434 | 1,696 | 1,334 | 0.53 |
| Zhao et al | 185 | 74 | 90 | 21 | 200 | 108 | 79 | 13 | 238 | 132 | 295 | 105 | 0.37 |
| Tanikawa et al | 2,300 | 1,030 | 1,073 | 197 | 16,567 | 6,620 | 7,587 | 2,360 | 3,133 | 1,467 | 20,827 | 12,307 | 0.32 |
| Song et al | 3,245 | 576 | 1,620 | 1,049 | 1,700 | 414 | 818 | 468 | 2,772 | 3,718 | 1,646 | 1,754 | 0.57 |
| Zeng et al | 460 | 202 | 216 | 42 | 549 | 289 | 223 | 37 | 620 | 300 | 801 | 297 | 0.33 |
| Lochhead et al I | 312 | 47 | 143 | 102 | 383 | 101 | 166 | 115 | 237 | 347 | 368 | 396 | 0.59 |
| Lochhead et al II | 309 | 85 | 129 | 94 | 211 | 49 | 110 | 49 | 299 | 317 | 208 | 208 | 0.51 |
| Ou et al | 196 | 85 | 93 | 18 | 246 | 132 | 96 | 18 | 263 | 129 | 360 | 132 | 0.33 |
| Lu et al | 1,053 | 547 | 404 | 72 | 1,110 | 605 | 387 | 77 | 1,498 | 548 | 1,597 | 541 | 0.27 |
| Chen et al | 460 | 202 | 216 | 42 | 549 | 289 | 223 | 37 | 620 | 300 | 801 | 297 | 0.33 |
| Matsuo et al | 708 | 330 | 329 | 49 | 708 | 273 | 338 | 97 | 989 | 427 | 884 | 532 | 0.30 |
| Wu et al | 1,736 | 759 | 819 | 132 | 1,020 | 506 | 412 | 77 | 2,337 | 1,083 | 1,424 | 566 | 0.32 |
| Sakamoto et al I | 1,531 | 96 | 700 | 728 | 1,399 | 210 | 650 | 536 | 892 | 2,156 | 1,070 | 1,722 | 0.71 |
| Sakamoto et al II | 871 | 133 | 461 | 277 | 390 | 122 | 176 | 92 | 727 | 1,015 | 420 | 360 | 0.58 |
| Wang et al | 1,210 | 604 | 509 | 97 | 1,008 | 566 | 376 | 66 | 1,717 | 703 | 1,508 | 508 | 0.29 |
| Ma et al | 184 | 84 | 80 | 11 | 962 | 543 | 355 | 64 | 248 | 102 | 1,441 | 483 | 0.29 |
| Fu et al | 5,393 | 1,363 | 2,804 | 1,226 | 7,324 | 2,107 | 3,645 | 1,572 | 5,530 | 5,256 | 7,859 | 6,789 | 0.49 |
| Wang et al | 581 | 272 | 259 | 50 | 580 | 316 | 220 | 44 | 803 | 359 | 852 | 308 | 0.31 |
| Wu et al | 5,038 | 1,288 | 2,613 | 1,137 | 9,363 | 2,842 | 4,668 | 1,853 | 5,189 | 4,887 | 10,352 | 8,374 | 0.49 |
| Esophageal cancer | |||||||||||||
| Dai et al | 2,083 | 1,232 | 724 | 127 | 2,220 | 1,222 | 851 | 147 | 3,188 | 978 | 3,295 | 1,145 | 0.23 |
| Lochhead et al II | 159 | 61 | 63 | 34 | 211 | 49 | 110 | 49 | 185 | 131 | 208 | 208 | 0.41 |
| Gallbladder cancer | |||||||||||||
| Rai et al | 405 | 104 | 233 | 68 | 247 | 79 | 126 | 42 | 441 | 369 | 284 | 210 | 0.46 |
| Ono et al | 44 | 12 | 23 | 9 | 173 | 68 | 75 | 30 | 47 | 41 | 211 | 135 | 0.47 |
| Colorectal cancer | |||||||||||||
| Smith et al | 77 | 25 | 39 | 13 | 804 | 287 | 387 | 130 | 89 | 65 | 961 | 647 | 0.42 |
Notes: C represents the major allele, T represents the minor allele.
Abbreviation: MAF, minor allele frequencies; M–H, Mantel–Haenszel.
Meta-analysis results
| Comparisons | OR | 95% CI | Heterogeneity
| Effects model | ||
|---|---|---|---|---|---|---|
| 1.18 | 1.08–1.28 | 0.0001 | 91% | <0.00001 | R | |
| Gastric cancer | 1.26 | 1.10–1.45 | 0.001 | 94% | <0.00001 | R |
| Bladder cancer | 1.13 | 1.06–1.21 | 0.0005 | 63% | 0.03 | R |
| Others | 0.97 | 0.81–1.16 | 62% | 0.03 | R | |
| Asian | 1.19 | 1.05–1.35 | 0.007 | 93% | <0.00001 | R |
| Caucasian | 1.15 | 1.04–1.26 | 0.004 | 75% | 0.0005 | R |
| Mixed | 1.44 | 1.14–1.81 | 0.002 | NA | NA | |
| 1.36 | 1.14–1.62 | 0.0008 | 90% | <0.00001 | R | |
| Gastric cancer | 1.51 | 1.10–2.08 | 0.01 | 94% | <0.00001 | R |
| Bladder cancer | 1.28 | 1.20–1.37 | <0.00001 | 0% | 0.57 | F |
| Others | 0.91 | 0.75–1.10 | 39% | 0.16 | F | |
| Asian | 1.37 | 1.03–1.82 | 0.03 | 92% | <0.00001 | R |
| Caucasian | 1.32 | 1.10–1.59 | 0.003 | 73% | 0.001 | R |
| Mixed | 2.17 | 1.32–3.59 | 0.002 | NA | NA | |
| 1.29 | 1.17–1.44 | <0.00001 | 85% | <0.00001 | R | |
| Gastric cancer | 1.39 | 1.19–1.63 | <0.0001 | 87% | <0.00001 | R |
| Bladder cancer | 1.23 | 1.17–1.30 | <0.00001 | 0% | 0.65 | F |
| Others | 0.98 | 0.68–1.41 | 77% | 0.001 | R | |
| Asian | 1.36 | 1.18–1.57 | <0.0001 | 88% | <0.00001 | R |
| Caucasian | 1.13 | 0.95–1.34 | 79% | <0.0001 | R | |
| Mixed | 1.70 | 1.05–2.77 | 0.03 | NA | NA | |
| 1.32 | 1.18–1.49 | <0.00001 | 90% | <0.00001 | R | |
| Gastric cancer | 1.44 | 1.19–1.74 | 0.0002 | 92% | <0.00001 | R |
| Bladder cancer | 1.25 | 1.19–1.31 | <0.00001 | 0% | 0.64 | F |
| Others | 0.98 | 0.69–1.38 | 77% | 0.002 | R | |
| Asian | 1.38 | 1.17–1.62 | 0.0001 | 92% | <0.00001 | R |
| Caucasian | 1.18 | 1.00–1.40 | 80% | <0.0001 | R | |
| Mixed | 1.88 | 1.19–2.99 | 0.007 | NA | NA | |
| 1.15 | 1.02–1.30 | 0.02 | 83% | <0.00001 | R | |
| Gastric cancer | 1.22 | 0.99–1.49 | 89% | <0.00001 | R | |
| Bladder cancer | 1.13 | 1.07–1.20 | <0.0001 | 0% | 0.56 | F |
| Others | 0.95 | 0.79–1.14 | 0% | 0.96 | F | |
| Asian | 1.13 | 0.93–1.36 | 87% | <0.00001 | R | |
| Caucasian | 1.15 | 1.09–1.22 | <0.00001 | 47% | 0.08 | F |
| Mixed | 1.46 | 1.05–2.03 | 0.02 | NA | NA | |
Note: P-values in bold indicate nonsignificance.
Abbreviations: F, fixed; NA, not applicable; R, random; CI, confidence interval; OR, odds ratio; M–H, Mantel–Haenszel.
Figure 2Forest plots of the PSCA rs2294008 polymorphism and cancer risk in the overall population and each subgroup stratified by cancer type (T vs C).
Notes: The squares and horizontal lines correspond to the study-specific OR and 95% CI. The area of the squares reflects the weight (inverse of the variance). The diamonds represent the summary OR and 95% CI.
Abbreviations: CI, confidence interval; OR, odds ratio; GC, gastric cancer; BC, bladder cancer; M–H, Mantel–Haenszel.
Figure 3Forest plots of PSCA rs2294008 polymorphism and cancer risk in the overall population and each subgroup stratified by ethnicity (T vs C).
Notes: The squares and horizontal lines correspond to the study specific OR and 95% CI. The area of the squares reflects the weight (inverse of the variance). The diamonds represent the summary OR and 95% CI.
Abbreviations: CI, confidence interval; OR, odds ratio; M–H, Mantel–Haenszel.
Figure 4Funnel plot assessing evidence of publication bias from 26 studies (T vs C).
Abbreviations: OR, odds ratio; SE, standard error.