Literature DB >> 25705474

Crystal structure of [3-(1H-benzimidazol-2-yl)propano-ato-κN (3)][3-(1H-benzimid-azol-2-yl)propanoic acid-κN (3)]copper(I).

Zhimin Liu1, Shengrun Zheng2, Sisi Feng3.   

Abstract

In the title compound, [Cu(C10H9N2O2)(C10H10N2O2)], the Cu(I) ion is situated at a crystallographic centre of inversion and is coordinated in a linear environment by two benzimidazole N atoms from two symmetry-related 2-propanoic-1H-benzimidazole ligands. The ligands are disordered in a sense that statistically one of the carb-oxy-lic acid groups in each mol-ecule is deprotonated. In the crystal, O-H⋯O hydrogen bonds link the mol-ecules into chains along the a-axis direction. These chains are additionally linked into infinite two-dimensional networks in the ab plane by N-H⋯O hydrogen bonds.

Entities:  

Keywords:  3-(1H-benzimidazol-2-yl)propanoic acid; copper(I); crystal structure; hydrogen bonding

Year:  2015        PMID: 25705474      PMCID: PMC4331864          DOI: 10.1107/S2056989014026656

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For background to benzimidazole complexes with copper(I), see: Lei et al. (2010 ▸). For the structures and properties of transition metal complexes with 3-(1H-benzimidazol-2-yl)propanoic acid ligands, see: Zheng et al. (2012 ▸); Zeng et al. (2007 ▸); Yao et al. (2008 ▸); Choi (2004 ▸).

Experimental

Crystal data

[Cu(C10H9N2O2)(C10H10N2O2)] M = 442.93 Monoclinic, a = 21.137 (5) Å b = 6.4979 (14) Å c = 16.235 (4) Å β = 121.949 (2)° V = 1892.0 (7) Å3 Z = 4 Mo Kα radiation μ = 1.19 mm−1 T = 298 K 0.28 × 0.24 × 0.20 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▸) T min = 0.732, T max = 0.797 4975 measured reflections 1855 independent reflections 1370 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.101 S = 1.01 1855 reflections 134 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.26 e Å−3

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: SAINT (Bruker, 2002 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989014026656/im2457sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989014026656/im2457Isup2.hkl Click here for additional data file. . DOI: 10.1107/S2056989014026656/im2457fig1.tif The structure of the title compound, showing 30% probability displacement ellipsoids and the atom-numbering scheme. Click here for additional data file. . DOI: 10.1107/S2056989014026656/im2457fig2.tif Part of the crystal structure of the title compound, showing the formation of the two-dimensional network by hydrogen bonds (dashed lines). H atoms are omitted for clarity. CCDC reference: 1033367 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Cu(C10H9N2O2)(C10H10N2O2)]F(000) = 912
Mr = 442.93Dx = 1.555 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1118 reflections
a = 21.137 (5) Åθ = 2.3–22.1°
b = 6.4979 (14) ŵ = 1.19 mm1
c = 16.235 (4) ÅT = 298 K
β = 121.949 (2)°Block, yellow
V = 1892.0 (7) Å30.28 × 0.24 × 0.20 mm
Z = 4
Bruker APEXII CCD diffractometer1855 independent reflections
Radiation source: fine-focus sealed tube1370 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
φ and ω scansθmax = 26.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −26→25
Tmin = 0.732, Tmax = 0.797k = −8→7
4975 measured reflectionsl = −17→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0474P)2 + 1.3591P] where P = (Fo2 + 2Fc2)/3
1855 reflections(Δ/σ)max < 0.001
134 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cu10.25000.25000.00000.0438 (2)
N10.22545 (12)0.4838 (3)0.04227 (16)0.0377 (5)
N20.16621 (13)0.7649 (3)0.03970 (17)0.0406 (6)
H2A0.13120.85480.01990.049*
C10.27220 (15)0.5977 (4)0.12627 (19)0.0359 (6)
C70.16303 (15)0.5906 (4)−0.00686 (19)0.0369 (6)
C60.23477 (16)0.7750 (4)0.1243 (2)0.0386 (6)
C20.34360 (16)0.5579 (5)0.2038 (2)0.0480 (7)
H20.36920.43960.20590.058*
C90.03220 (15)0.4427 (4)−0.0953 (2)0.0441 (7)
H9A0.02380.5342−0.05480.053*
H9B−0.01240.4456−0.15980.053*
C100.04164 (16)0.2279 (4)−0.0559 (2)0.0418 (7)
C50.26760 (17)0.9213 (5)0.1980 (2)0.0496 (8)
H50.24301.04210.19540.059*
C80.09664 (15)0.5287 (5)−0.1016 (2)0.0439 (7)
H8A0.11180.4256−0.13100.053*
H8B0.07890.6475−0.14430.053*
C30.37526 (18)0.7010 (5)0.2779 (2)0.0520 (8)
H30.42280.67750.33140.062*
C40.33771 (18)0.8787 (5)0.2743 (2)0.0532 (8)
H40.36090.97180.32540.064*
O2−0.00441 (13)0.1776 (3)−0.03148 (19)0.0594 (6)
H2B0.00090.0554−0.01660.089*0.50
O10.08916 (14)0.1136 (4)−0.05134 (19)0.0717 (7)
U11U22U33U12U13U23
Cu10.0501 (3)0.0312 (3)0.0496 (3)0.0076 (2)0.0261 (3)−0.0045 (2)
N10.0411 (12)0.0305 (13)0.0430 (13)0.0056 (10)0.0234 (11)0.0001 (10)
N20.0450 (13)0.0300 (13)0.0523 (15)0.0121 (11)0.0295 (12)0.0029 (11)
C10.0414 (15)0.0297 (15)0.0442 (16)0.0002 (12)0.0278 (13)−0.0006 (12)
C70.0421 (15)0.0327 (15)0.0406 (15)0.0062 (13)0.0250 (13)0.0068 (12)
C60.0456 (16)0.0323 (16)0.0483 (16)0.0016 (13)0.0319 (14)0.0006 (13)
C20.0433 (16)0.0448 (19)0.0552 (19)0.0062 (14)0.0256 (15)0.0004 (15)
C90.0420 (16)0.0406 (18)0.0459 (17)0.0105 (13)0.0207 (14)0.0035 (13)
C100.0392 (15)0.0414 (18)0.0429 (16)0.0052 (14)0.0203 (13)−0.0018 (13)
C50.061 (2)0.0399 (18)0.061 (2)−0.0009 (15)0.0415 (18)−0.0099 (15)
C80.0484 (16)0.0423 (18)0.0426 (16)0.0092 (14)0.0252 (14)0.0075 (13)
C30.0431 (17)0.062 (2)0.0504 (18)−0.0074 (15)0.0242 (15)−0.0065 (16)
C40.058 (2)0.055 (2)0.0547 (19)−0.0152 (17)0.0351 (17)−0.0184 (16)
O20.0629 (14)0.0438 (13)0.0855 (17)−0.0025 (12)0.0489 (14)−0.0009 (13)
O10.0807 (16)0.0472 (15)0.111 (2)0.0285 (13)0.0671 (16)0.0266 (14)
Cu1—N1i1.851 (2)C9—C81.526 (4)
Cu1—N11.851 (2)C9—H9A0.9700
N1—C71.321 (3)C9—H9B0.9700
N1—C11.399 (3)C10—O11.220 (3)
N2—C71.343 (3)C10—O21.273 (3)
N2—C61.373 (4)C5—C41.366 (4)
N2—H2A0.8600C5—H50.9300
C1—C21.385 (4)C8—H8A0.9700
C1—C61.388 (4)C8—H8B0.9700
C7—C81.488 (4)C3—C41.384 (4)
C6—C51.392 (4)C3—H30.9300
C2—C31.381 (4)C4—H40.9300
C2—H20.9300O2—H2B0.8200
C9—C101.504 (4)
N1i—Cu1—N1180.00 (13)C10—C9—H9B108.2
C7—N1—C1106.0 (2)C8—C9—H9B108.2
C7—N1—Cu1126.43 (19)H9A—C9—H9B107.3
C1—N1—Cu1127.13 (17)O1—C10—O2124.5 (3)
C7—N2—C6108.4 (2)O1—C10—C9120.7 (3)
C7—N2—H2A125.8O2—C10—C9114.8 (2)
C6—N2—H2A125.8C4—C5—C6116.7 (3)
C2—C1—C6120.6 (3)C4—C5—H5121.7
C2—C1—N1130.9 (3)C6—C5—H5121.7
C6—C1—N1108.5 (2)C7—C8—C9114.6 (2)
N1—C7—N2111.5 (2)C7—C8—H8A108.6
N1—C7—C8125.2 (2)C9—C8—H8A108.6
N2—C7—C8123.3 (2)C7—C8—H8B108.6
N2—C6—C1105.7 (2)C9—C8—H8B108.6
N2—C6—C5132.5 (3)H8A—C8—H8B107.6
C1—C6—C5121.9 (3)C2—C3—C4121.4 (3)
C3—C2—C1117.3 (3)C2—C3—H3119.3
C3—C2—H2121.3C4—C3—H3119.3
C1—C2—H2121.3C5—C4—C3122.0 (3)
C10—C9—C8116.5 (2)C5—C4—H4119.0
C10—C9—H9A108.2C3—C4—H4119.0
C8—C9—H9A108.2C10—O2—H2B109.5
C7—N1—C1—C2179.1 (3)C2—C1—C6—C51.7 (4)
Cu1—N1—C1—C2−8.4 (4)N1—C1—C6—C5−179.1 (2)
C7—N1—C1—C60.0 (3)C6—C1—C2—C30.0 (4)
Cu1—N1—C1—C6172.48 (18)N1—C1—C2—C3−179.0 (3)
C1—N1—C7—N2−0.2 (3)C8—C9—C10—O1−16.7 (4)
Cu1—N1—C7—N2−172.78 (17)C8—C9—C10—O2165.2 (3)
C1—N1—C7—C8−179.9 (2)N2—C6—C5—C4178.6 (3)
Cu1—N1—C7—C87.5 (4)C1—C6—C5—C4−2.2 (4)
C6—N2—C7—N10.4 (3)N1—C7—C8—C9103.1 (3)
C6—N2—C7—C8−180.0 (2)N2—C7—C8—C9−76.5 (3)
C7—N2—C6—C1−0.4 (3)C10—C9—C8—C7−74.7 (3)
C7—N2—C6—C5178.9 (3)C1—C2—C3—C4−1.0 (4)
C2—C1—C6—N2−179.0 (2)C6—C5—C4—C31.2 (4)
N1—C1—C6—N20.2 (3)C2—C3—C4—C50.4 (5)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O1ii0.861.972.725 (3)146
O2—H2B···O2iii0.821.692.491 (5)166
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N2H2AO1i 0.861.972.725(3)146
O2H2BO2ii 0.821.692.491(5)166

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A unique 2D framework containing linear trimeric cobalt(II) of mixed Td-Oh-Td geometries linked by two different single-carboxylate-aromatic amine ligands: structure and magnetic properties.

Authors:  Min-Xia Yao; Ming-Hua Zeng; Hua-Hong Zou; Yan-Ling Zhou; Hong Liang
Journal:  Dalton Trans       Date:  2008-03-20       Impact factor: 4.390

3.  Bis[μ-3-(1H-benzimidazol-2-yl)benzoato]dicopper(I).

Authors:  Ke-Wei Lei; Dong-Guo Xia; Jie Li; Zheng-Yu Su
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-17
  3 in total
  1 in total

1.  The mol-ecular and crystal structures of 2-(3-hy-droxy-prop-yl)benzimidazole and its nitrate salt.

Authors:  Dilnoza Rakhmonova; Zukhra Kadirova; Batirbay Torambetov; Shakhnoza Kadirova; Jamshid Ashurov; Svitlana Shishkina
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-01-20
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.