Literature DB >> 21589267

Bis[μ-3-(1H-benzimidazol-2-yl)benzoato]dicopper(I).

Ke-Wei Lei1, Dong-Guo Xia, Jie Li, Zheng-Yu Su.   

Abstract

The dimeric title complex, [Cu(2)(C(14)n class="Species">H(9)N(2)O(2))(2)], resides on a center of symmetry. In the crystal, the mol-ecules are packed via π-π stacking inter-actions alternating between imidazole and benzene rings [mean inter-planar distances = 3.754 (3) and 3.624 (3) Å]. An inter-molecular N-H⋯O hydrogen bond links the dimers together. The two-coordinate Cu(I) atom displays an O-Cu-N bond angle of 176.3 (2)°. The CuCu distance within the dimer is 5.100 (2) Å.

Entities:  

Year:  2010        PMID: 21589267      PMCID: PMC3011389          DOI: 10.1107/S1600536810046040

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to complexes of benzimidazole with n class="Chemical">copper(I), see: Ruettimann et al. (1992 ▶).

Experimental

Crystal data

[Cu2(C14n class="Species">H9N2O2)2] M = 601.54 Monoclinic, a = 4.875 (2) Å b = 13.417 (7) Å c = 18.130 (9) Å β = 103.643 (12)° V = 1152.4 (10) Å3 Z = 2 Mo Kα radiation μ = 1.89 mm−1 T = 296 K 0.52 × 0.44 × 0.40 mm

Data collection

Bruker SMART APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.387, T max = 0.473 7794 measured reflections 2013 independent reflections 1083 reflections with I > 2σ(I) R int = 0.107

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.148 S = 1.01 2013 reflections 172 parameters H-atom parameters constrained Δρmax = 0.69 e Å−3 Δρmin = −0.62 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810046040/om2365sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810046040/om2365Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu2(C14H9N2O2)2]F(000) = 608
Mr = 601.54Dx = 1.734 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1146 reflections
a = 4.875 (2) Åθ = 2.3–21.7°
b = 13.417 (7) ŵ = 1.89 mm1
c = 18.130 (9) ÅT = 296 K
β = 103.643 (12)°Block, brown
V = 1152.4 (10) Å30.52 × 0.44 × 0.40 mm
Z = 2
Bruker SMART APEXII diffractometer2013 independent reflections
Radiation source: fine-focus sealed tube1083 reflections with I > 2σ(I)
graphiteRint = 0.107
φ and ω scansθmax = 25.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −5→4
Tmin = 0.387, Tmax = 0.473k = −15→15
7794 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.148H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0617P)2 + 0.5546P] where P = (Fo2 + 2Fc2)/3
2013 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.69 e Å3
0 restraintsΔρmin = −0.62 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.09380 (19)0.62278 (7)0.49047 (4)0.0455 (3)
O10.0431 (11)0.6329 (4)0.3136 (3)0.0546 (13)
O20.2212 (11)0.5488 (4)0.4211 (2)0.0528 (14)
N11.0395 (10)0.2257 (4)0.3273 (3)0.0336 (13)
H10.99890.20780.28040.040*
N21.0206 (11)0.3061 (4)0.4335 (3)0.0340 (13)
C11.4326 (14)0.2163 (5)0.5182 (4)0.0433 (18)
H1A1.42750.24970.56280.052*
C21.6298 (14)0.1429 (6)0.5170 (4)0.051 (2)
H21.75830.12630.56200.061*
C31.6418 (15)0.0926 (5)0.4499 (5)0.053 (2)
H31.77860.04380.45160.064*
C41.4583 (14)0.1134 (5)0.3825 (4)0.0433 (18)
H41.46640.08010.33810.052*
C51.2557 (13)0.1879 (5)0.3836 (4)0.0363 (16)
C61.2412 (13)0.2388 (5)0.4501 (4)0.0343 (16)
C70.9009 (13)0.2964 (5)0.3587 (3)0.0339 (16)
C80.6567 (13)0.3523 (4)0.3147 (3)0.0317 (16)
C90.5412 (14)0.3314 (5)0.2385 (4)0.0407 (17)
H90.61920.28120.21450.049*
C100.3124 (14)0.3844 (5)0.1981 (4)0.0472 (19)
H100.23450.36890.14750.057*
C110.1979 (14)0.4609 (5)0.2330 (4)0.0419 (18)
H110.04680.49780.20530.050*
C120.3074 (13)0.4824 (4)0.3086 (3)0.0311 (15)
C130.5339 (13)0.4285 (5)0.3486 (4)0.0347 (16)
H130.60730.44320.39960.042*
C140.1782 (14)0.5627 (5)0.3490 (4)0.0378 (17)
U11U22U33U12U13U23
Cu10.0639 (6)0.0446 (6)0.0288 (5)0.0096 (5)0.0128 (4)−0.0037 (4)
O10.075 (4)0.049 (3)0.042 (3)0.021 (3)0.018 (3)0.008 (2)
O20.083 (4)0.050 (3)0.026 (3)0.022 (3)0.014 (2)0.002 (2)
N10.035 (3)0.036 (3)0.031 (3)0.002 (3)0.009 (3)−0.002 (3)
N20.045 (3)0.032 (3)0.027 (3)0.000 (3)0.012 (3)0.000 (2)
C10.050 (4)0.042 (4)0.039 (4)−0.008 (4)0.012 (3)0.005 (3)
C20.039 (4)0.053 (5)0.054 (5)−0.005 (4)−0.002 (4)0.017 (4)
C30.046 (5)0.039 (5)0.077 (6)0.009 (4)0.019 (4)0.008 (4)
C40.048 (4)0.038 (4)0.047 (4)−0.002 (4)0.018 (3)−0.001 (4)
C50.034 (4)0.035 (4)0.043 (4)−0.002 (3)0.018 (3)0.004 (3)
C60.032 (4)0.040 (4)0.031 (4)0.003 (3)0.009 (3)0.003 (3)
C70.039 (4)0.033 (4)0.031 (4)−0.007 (3)0.012 (3)0.005 (3)
C80.035 (4)0.029 (4)0.032 (4)−0.003 (3)0.012 (3)0.004 (3)
C90.046 (4)0.046 (4)0.031 (4)0.006 (4)0.009 (3)−0.009 (3)
C100.054 (5)0.060 (5)0.026 (4)0.006 (4)0.009 (3)−0.013 (4)
C110.045 (4)0.048 (5)0.032 (4)0.002 (4)0.009 (3)0.003 (3)
C120.039 (4)0.031 (4)0.026 (3)0.001 (3)0.013 (3)−0.001 (3)
C130.044 (4)0.031 (4)0.029 (4)−0.002 (3)0.010 (3)−0.004 (3)
C140.048 (4)0.036 (4)0.031 (4)−0.001 (4)0.011 (3)0.001 (3)
Cu1—O21.823 (5)C3—H30.9300
Cu1—N2i1.867 (5)C4—C51.408 (9)
O1—C141.239 (8)C4—H40.9300
O2—C141.287 (7)C5—C61.402 (9)
N1—C71.366 (8)C7—C81.472 (8)
N1—C51.379 (8)C8—C91.393 (9)
N1—H10.8600C8—C131.399 (9)
N2—C71.349 (8)C9—C101.378 (9)
N2—C61.382 (8)C9—H90.9300
N2—Cu1i1.867 (5)C10—C111.391 (9)
C1—C21.380 (9)C10—H100.9300
C1—C61.394 (9)C11—C121.378 (8)
C1—H1A0.9300C11—H110.9300
C2—C31.405 (11)C12—C131.375 (8)
C2—H20.9300C12—C141.520 (9)
C3—C41.363 (10)C13—H130.9300
O2—Cu1—N2i176.3 (2)C1—C6—C5119.8 (6)
C14—O2—Cu1128.4 (4)N2—C7—N1110.3 (5)
C7—N1—C5108.3 (5)N2—C7—C8126.8 (6)
C7—N1—H1125.9N1—C7—C8122.9 (5)
C5—N1—H1125.9C9—C8—C13117.9 (6)
C7—N2—C6106.6 (5)C9—C8—C7121.5 (6)
C7—N2—Cu1i131.1 (5)C13—C8—C7120.6 (6)
C6—N2—Cu1i121.7 (4)C10—C9—C8120.7 (6)
C2—C1—C6117.7 (7)C10—C9—H9119.7
C2—C1—H1A121.2C8—C9—H9119.7
C6—C1—H1A121.2C9—C10—C11120.1 (6)
C1—C2—C3121.8 (7)C9—C10—H10120.0
C1—C2—H2119.1C11—C10—H10120.0
C3—C2—H2119.1C12—C11—C10120.2 (6)
C4—C3—C2121.7 (7)C12—C11—H11119.9
C4—C3—H3119.1C10—C11—H11119.9
C2—C3—H3119.1C13—C12—C11119.3 (6)
C3—C4—C5116.6 (7)C13—C12—C14119.4 (5)
C3—C4—H4121.7C11—C12—C14121.3 (6)
C5—C4—H4121.7C12—C13—C8121.8 (6)
N1—C5—C6105.8 (6)C12—C13—H13119.1
N1—C5—C4131.8 (6)C8—C13—H13119.1
C6—C5—C4122.4 (6)O1—C14—O2125.2 (6)
N2—C6—C1131.2 (6)O1—C14—C12121.2 (6)
N2—C6—C5109.0 (5)O2—C14—C12113.6 (6)
N2i—Cu1—O2—C14−169 (3)C5—N1—C7—N20.2 (7)
C6—C1—C2—C30.6 (10)C5—N1—C7—C8−179.8 (5)
C1—C2—C3—C4−0.3 (11)N2—C7—C8—C9−176.0 (6)
C2—C3—C4—C5−0.1 (10)N1—C7—C8—C94.1 (9)
C7—N1—C5—C60.0 (7)N2—C7—C8—C134.1 (10)
C7—N1—C5—C4179.0 (7)N1—C7—C8—C13−175.8 (6)
C3—C4—C5—N1−178.7 (7)C13—C8—C9—C10−0.2 (10)
C3—C4—C5—C60.1 (10)C7—C8—C9—C10180.0 (6)
C7—N2—C6—C1−179.1 (7)C8—C9—C10—C111.3 (11)
Cu1i—N2—C6—C1−6.9 (10)C9—C10—C11—C12−1.8 (10)
C7—N2—C6—C50.4 (7)C10—C11—C12—C131.1 (10)
Cu1i—N2—C6—C5172.5 (4)C10—C11—C12—C14−177.3 (6)
C2—C1—C6—N2178.8 (6)C11—C12—C13—C80.0 (10)
C2—C1—C6—C5−0.6 (10)C14—C12—C13—C8178.5 (6)
N1—C5—C6—N2−0.2 (7)C9—C8—C13—C12−0.5 (9)
C4—C5—C6—N2−179.3 (5)C7—C8—C13—C12179.4 (6)
N1—C5—C6—C1179.3 (6)Cu1—O2—C14—O11.9 (11)
C4—C5—C6—C10.2 (10)Cu1—O2—C14—C12−177.3 (4)
C6—N2—C7—N1−0.4 (7)C13—C12—C14—O1156.2 (6)
Cu1i—N2—C7—N1−171.5 (4)C11—C12—C14—O1−25.4 (10)
C6—N2—C7—C8179.7 (6)C13—C12—C14—O2−24.5 (9)
Cu1i—N2—C7—C88.6 (10)C11—C12—C14—O2153.9 (7)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1ii0.861.952.783 (7)164
Cu1—O21.823 (5)
Cu1—N2i 
O2—Cu1—N2i176.3 (2)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1ii0.861.952.783 (7)164

Symmetry code: (ii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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1.  Crystal structure of [3-(1H-benzimidazol-2-yl)propano-ato-κN (3)][3-(1H-benzimid-azol-2-yl)propanoic acid-κN (3)]copper(I).

Authors:  Zhimin Liu; Shengrun Zheng; Sisi Feng
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-01
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