Literature DB >> 35145753

The mol-ecular and crystal structures of 2-(3-hy-droxy-prop-yl)benzimidazole and its nitrate salt.

Dilnoza Rakhmonova1, Zukhra Kadirova1, Batirbay Torambetov1, Shakhnoza Kadirova1, Jamshid Ashurov2, Svitlana Shishkina3.   

Abstract

2-(3-Hy-droxy-prop-yl)-1H-benzimidazole, C10H12N2O, which has potential biological activity, can be used as a ligand for complexation with metals. This compound is an electron donor, due to the lone pair of the nitro-gen atom in the imidazole ring. This nitro-gen atom also acts as a proton acceptor. In the crystalline phase, the nitrate salt, namely, 2-(3-hy-droxy-prop-yl)-1H-benzim-id-azol-3-ium nitrate, C10H13N2O+·NO3 -, has been studied. The protonation of the 2-(3-hy-droxy-prop-yl)benzimidazole unit results in significant delocalization of the electron density within the imidazole ring. The salt formation leads to variations in the inter-molecular inter-actions, which were studied by analysis of the Hirshfeld surfaces and two-dimensional fingerprint plots. © Rakhmonova et al. 2022.

Entities:  

Keywords:  2-(3-hy­droxy­prop­yl)benzimidazole; Hirshfeld analysis; crystal structure; hydrogen bond; mol­ecular structure; periodic calculations

Year:  2022        PMID: 35145753      PMCID: PMC8819435          DOI: 10.1107/S2056989022000585

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


  11 in total

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Review 4.  Benzimidazole: an emerging scaffold for analgesic and anti-inflammatory agents.

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Authors:  Richard J Gildea; Luc J Bourhis; Oleg V Dolomanov; Ralf W Grosse-Kunstleve; Horst Puschmann; Paul D Adams; Judith A K Howard
Journal:  J Appl Crystallogr       Date:  2011-10-29       Impact factor: 3.304

6.  Crystal structure of [3-(1H-benzimidazol-2-yl)propano-ato-κN (3)][3-(1H-benzimid-azol-2-yl)propanoic acid-κN (3)]copper(I).

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Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-01

7.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
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8.  Use of intensity quotients and differences in absolute structure refinement.

Authors:  Simon Parsons; Howard D Flack; Trixie Wagner
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2013-05-17

9.  Synthesis and antifungal activity of benzimidazole, benzotriazole and aminothiazole derivatives.

Authors:  S Khabnadideh; Z Rezaei; K Pakshir; K Zomorodian; N Ghafari
Journal:  Res Pharm Sci       Date:  2012-04

10.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
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