| Literature DB >> 25705443 |
Kazuma Gotoh1, Hiroyuki Ishida1.
Abstract
In each of the title isomeric compounds, C9H7.3N·C7H3.7ClNO4, (I), and C9H8N·C7H3ClNO4, (II), of iso-quinoline with 3-chloro-2-nitro-benzoic acid and 4-chloro-2-nitro-benzoic acid, the two components are linked by a short hydrogen bond between a base N atom and a carb-oxy O atom. In the hydrogen-bonded unit of (I), the H atom is disordered over two positions with N and O site occupancies of 0.30 (3) and 0.70 (3), respectively, while in (II), an acid-base inter-action involving H-atom transfer occurs and the H atom is located at the N site. In the crystal of (I), the acid-base units are connected through C-H⋯O hydrogen bonds into a tape structure along the b-axis direction. Inversion-related adjacent tapes are further linked through π-π inter-actions [centroid-centroid distances = 3.6389 (7)-3.7501 (7) Å], forming a layer parallel to (001). In the crystal of (II), the acid-base units are connected through C-H⋯O hydrogen bonds into a ladder structure along the a-axis direction. The ladders are further linked by another C-H⋯O hydrogen bond into a layer parallel to (001).Entities:
Keywords: chloro- and nitro-substituted benzoic acid; crystal structure; isoquinoline; short hydrogen bond
Year: 2015 PMID: 25705443 PMCID: PMC4331863 DOI: 10.1107/S2056989014026152
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1A molecular view of (I), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level and H atoms are shown as small spheres of arbitrary radii. The disordered O—H⋯N/N—H⋯O hydrogen bond and the C—H⋯O interaction are indicated by dashed lines.
Hydrogen-bond geometry (, ) for (I)
|
|
| H |
|
|
|---|---|---|---|---|
| O1H1N2 | 0.84(2) | 1.74(2) | 2.5725(12) | 177(2) |
| N2H2O1 | 0.88(2) | 1.69(5) | 2.5725(12) | 172(5) |
| C5H5O2i | 0.95 | 2.49 | 3.3427(14) | 149 |
| C8H8O2 | 0.95 | 2.53 | 3.1977(14) | 128 |
Symmetry code: (i) .
Figure 2A molecular view of (II), showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level and H atoms are shown as small spheres of arbitrary radii.
Figure 3A packing diagram of (I), showing the hydrogen-bonded tape structure along the b axis. The dashed lines indicate disordered O—H⋯N/N—H⋯O hydrogen bonds and the C—H⋯O interactions. [Symmetry codes: (i) x, y − 1, z; (ii) x, y + 1, z.]
Figure 4A packing diagram of (I), showing the π–π stacking structure along the a axis. The dashed lines indicate disordered O—H⋯N/N—H⋯O hydrogen bonds and H atoms not involved in the hydrogen bonds have been omitted. [Symmetry codes: (iii) −x, −y + 1, −z + 1; (iv) −x + 1, −y + 1, −z + 1.]
Hydrogen-bond geometry (, ) for (II)
|
|
| H |
|
|
|---|---|---|---|---|
| N2H2O1 | 0.91(2) | 1.67(2) | 2.5738(14) | 169(2) |
| C3H3O2i | 0.95 | 2.21 | 3.1580(15) | 174 |
| C13H13O3ii | 0.95 | 2.52 | 3.3405(19) | 145 |
| C16H16O1iii | 0.95 | 2.43 | 3.3477(15) | 163 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 5A packing diagram of (II), showing the hydrogen-bonded ladder structure along the a axis. The dashed lines indicate N—H⋯O and C—H⋯O hydrogen bonds. H atoms not involved in the hydrogen bonds have been omitted. [Symmetry codes: (i) x + 1, y, z; (ii) −x + 1, −y, −z + 1.]
Experimental details
| (I) | (II) | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C9H7.3NC7H3.7ClNO4 | C9H8N+C7H3ClNO4 |
|
| 330.73 | 330.73 |
| Crystal system, space group | Triclinic, | Triclinic, |
| Temperature (K) | 190 | 190 |
|
| 6.93986(15), 7.6629(5), 13.9475(5) | 7.5916(3), 7.7607(3), 13.0456(4) |
| , , () | 83.945(3), 87.6039(16), 85.117(4) | 74.8360(11), 80.1736(10), 80.3642(13) |
|
| 734.50(6) | 724.84(4) |
|
| 2 | 2 |
| Radiation type | Mo | Mo |
| (mm1) | 0.28 | 0.29 |
| Crystal size (mm) | 0.35 0.28 0.10 | 0.39 0.32 0.23 |
| Data collection | ||
| Diffractometer | Rigaku R-AXIS RAPIDII | Rigaku R-AXIS RAPIDII |
| Absorption correction | Numerical ( | Numerical ( |
|
| 0.918, 0.972 | 0.903, 0.936 |
| No. of measured, independent and observed [ | 15432, 4278, 3729 | 21510, 4224, 3559 |
|
| 0.022 | 0.024 |
| (sin /)max (1) | 0.704 | 0.704 |
| Refinement | ||
|
| 0.034, 0.098, 1.08 | 0.039, 0.117, 1.07 |
| No. of reflections | 4278 | 4224 |
| No. of parameters | 219 | 212 |
| No. of restraints | 2 | 0 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
| max, min (e 3) | 0.41, 0.22 | 0.42, 0.16 |
Computer programs: PROCESS-AUTO (Rigaku/MSC, 2004 ▸), SHELXS97 and SHELXL2014 (Sheldrick, 2008 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), CrystalStructure (Rigaku, 2010 ▸) and PLATON (Spek, 2009 ▸).
| C9H8N+·C7H3ClNO4− | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 17960 reflections | |
| θ = 3.0–30.1° | |
| µ = 0.29 mm−1 | |
| α = 74.8360 (11)° | |
| β = 80.1736 (10)° | Block, colorless |
| γ = 80.3642 (13)° | 0.39 × 0.32 × 0.23 mm |
| Rigaku R-AXIS RAPIDII diffractometer | 3559 reflections with |
| Detector resolution: 10.000 pixels mm-1 | |
| ω scans | θmax = 30.0° |
| Absorption correction: numerical ( | |
| 21510 measured reflections | |
| 4224 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 4224 reflections | Δρmax = 0.42 e Å−3 |
| 212 parameters | Δρmin = −0.16 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Reflections were merged by |
| Cl1 | 0.89304 (5) | 0.83272 (5) | 0.98941 (3) | 0.04513 (12) | |
| O1 | 0.49156 (12) | 0.48077 (13) | 0.69271 (7) | 0.0359 (2) | |
| O2 | 0.25649 (12) | 0.50987 (15) | 0.81971 (8) | 0.0427 (2) | |
| O3 | 0.78736 (17) | 0.25408 (13) | 0.80657 (10) | 0.0503 (3) | |
| O4 | 0.91034 (13) | 0.46177 (16) | 0.68317 (9) | 0.0465 (3) | |
| N1 | 0.81282 (13) | 0.40954 (14) | 0.76667 (9) | 0.0328 (2) | |
| N2 | 0.31990 (13) | 0.26809 (14) | 0.63693 (8) | 0.0313 (2) | |
| C1 | 0.53627 (14) | 0.58384 (14) | 0.83982 (8) | 0.0253 (2) | |
| C2 | 0.72336 (14) | 0.54307 (14) | 0.82731 (8) | 0.0257 (2) | |
| C3 | 0.83671 (15) | 0.61582 (16) | 0.87214 (9) | 0.0293 (2) | |
| H3 | 0.9639 | 0.5862 | 0.8608 | 0.035* | |
| C4 | 0.75517 (17) | 0.73430 (15) | 0.93451 (9) | 0.0310 (2) | |
| C5 | 0.56930 (18) | 0.77436 (16) | 0.95367 (10) | 0.0338 (2) | |
| H5 | 0.5166 | 0.8522 | 0.9992 | 0.041* | |
| C6 | 0.46123 (16) | 0.69972 (15) | 0.90582 (9) | 0.0299 (2) | |
| H6 | 0.3339 | 0.7281 | 0.9182 | 0.036* | |
| C7 | 0.41584 (15) | 0.51806 (15) | 0.78102 (9) | 0.0281 (2) | |
| C8 | 0.24974 (17) | 0.14032 (19) | 0.71997 (10) | 0.0357 (3) | |
| H8 | 0.2368 | 0.1551 | 0.7910 | 0.043* | |
| C9 | 0.19825 (16) | −0.00741 (18) | 0.70253 (10) | 0.0344 (2) | |
| H9 | 0.1497 | −0.0957 | 0.7610 | 0.041* | |
| C10 | 0.21705 (14) | −0.02954 (15) | 0.59708 (9) | 0.0282 (2) | |
| C11 | 0.17073 (17) | −0.18170 (17) | 0.57248 (12) | 0.0363 (3) | |
| H11 | 0.1257 | −0.2761 | 0.6282 | 0.044* | |
| C12 | 0.19101 (18) | −0.19246 (19) | 0.46842 (13) | 0.0417 (3) | |
| H12 | 0.1586 | −0.2946 | 0.4524 | 0.050* | |
| C13 | 0.25903 (18) | −0.0555 (2) | 0.38392 (11) | 0.0404 (3) | |
| H13 | 0.2719 | −0.0664 | 0.3121 | 0.048* | |
| C14 | 0.30629 (16) | 0.09202 (18) | 0.40472 (9) | 0.0339 (2) | |
| H14 | 0.3528 | 0.1839 | 0.3478 | 0.041* | |
| C15 | 0.28566 (14) | 0.10747 (15) | 0.51186 (9) | 0.0264 (2) | |
| C16 | 0.33645 (15) | 0.25579 (16) | 0.53682 (9) | 0.0294 (2) | |
| H16 | 0.3834 | 0.3486 | 0.4808 | 0.035* | |
| H2 | 0.369 (3) | 0.354 (3) | 0.6545 (17) | 0.060 (6)* |
| Cl1 | 0.0583 (2) | 0.0493 (2) | 0.03860 (18) | −0.02822 (16) | −0.00558 (14) | −0.01675 (14) |
| O1 | 0.0312 (4) | 0.0486 (5) | 0.0341 (4) | −0.0119 (4) | −0.0042 (3) | −0.0166 (4) |
| O2 | 0.0260 (4) | 0.0626 (6) | 0.0428 (5) | −0.0125 (4) | −0.0022 (3) | −0.0155 (4) |
| O3 | 0.0648 (7) | 0.0320 (5) | 0.0575 (6) | 0.0025 (4) | −0.0139 (5) | −0.0187 (4) |
| O4 | 0.0342 (5) | 0.0670 (7) | 0.0459 (5) | −0.0106 (4) | 0.0058 (4) | −0.0311 (5) |
| N1 | 0.0273 (4) | 0.0377 (5) | 0.0386 (5) | 0.0004 (4) | −0.0087 (4) | −0.0185 (4) |
| N2 | 0.0251 (4) | 0.0361 (5) | 0.0365 (5) | −0.0036 (4) | −0.0051 (4) | −0.0146 (4) |
| C1 | 0.0255 (5) | 0.0250 (5) | 0.0250 (5) | −0.0044 (4) | −0.0037 (4) | −0.0044 (4) |
| C2 | 0.0260 (5) | 0.0265 (5) | 0.0258 (5) | −0.0040 (4) | −0.0029 (4) | −0.0085 (4) |
| C3 | 0.0278 (5) | 0.0340 (5) | 0.0286 (5) | −0.0085 (4) | −0.0039 (4) | −0.0090 (4) |
| C4 | 0.0404 (6) | 0.0285 (5) | 0.0281 (5) | −0.0131 (4) | −0.0055 (4) | −0.0078 (4) |
| C5 | 0.0436 (6) | 0.0274 (5) | 0.0317 (5) | −0.0042 (4) | −0.0024 (5) | −0.0114 (4) |
| C6 | 0.0295 (5) | 0.0287 (5) | 0.0298 (5) | −0.0013 (4) | −0.0021 (4) | −0.0070 (4) |
| C7 | 0.0257 (5) | 0.0289 (5) | 0.0304 (5) | −0.0061 (4) | −0.0070 (4) | −0.0045 (4) |
| C8 | 0.0319 (6) | 0.0482 (7) | 0.0287 (5) | −0.0040 (5) | −0.0029 (4) | −0.0133 (5) |
| C9 | 0.0311 (5) | 0.0417 (6) | 0.0274 (5) | −0.0074 (5) | −0.0014 (4) | −0.0028 (4) |
| C10 | 0.0220 (5) | 0.0308 (5) | 0.0309 (5) | −0.0021 (4) | −0.0054 (4) | −0.0052 (4) |
| C11 | 0.0296 (5) | 0.0312 (5) | 0.0491 (7) | −0.0039 (4) | −0.0098 (5) | −0.0082 (5) |
| C12 | 0.0349 (6) | 0.0391 (6) | 0.0602 (8) | 0.0020 (5) | −0.0175 (6) | −0.0247 (6) |
| C13 | 0.0360 (6) | 0.0527 (8) | 0.0381 (6) | 0.0052 (5) | −0.0128 (5) | −0.0227 (6) |
| C14 | 0.0298 (5) | 0.0430 (6) | 0.0278 (5) | 0.0002 (5) | −0.0062 (4) | −0.0080 (4) |
| C15 | 0.0207 (4) | 0.0313 (5) | 0.0267 (5) | −0.0012 (4) | −0.0048 (4) | −0.0063 (4) |
| C16 | 0.0228 (5) | 0.0328 (5) | 0.0323 (5) | −0.0035 (4) | −0.0044 (4) | −0.0068 (4) |
| Cl1—C4 | 1.7326 (12) | C6—H6 | 0.9500 |
| O1—C7 | 1.2784 (15) | C8—C9 | 1.3550 (19) |
| O2—C7 | 1.2340 (14) | C8—H8 | 0.9500 |
| O3—N1 | 1.2162 (15) | C9—C10 | 1.4108 (17) |
| O4—N1 | 1.2220 (15) | C9—H9 | 0.9500 |
| N1—C2 | 1.4734 (14) | C10—C11 | 1.4131 (17) |
| N2—C16 | 1.3176 (16) | C10—C15 | 1.4168 (15) |
| N2—C8 | 1.3632 (17) | C11—C12 | 1.363 (2) |
| N2—H2 | 0.91 (2) | C11—H11 | 0.9500 |
| C1—C6 | 1.3931 (15) | C12—C13 | 1.410 (2) |
| C1—C2 | 1.3933 (15) | C12—H12 | 0.9500 |
| C1—C7 | 1.5118 (15) | C13—C14 | 1.3590 (19) |
| C2—C3 | 1.3814 (15) | C13—H13 | 0.9500 |
| C3—C4 | 1.3855 (16) | C14—C15 | 1.4140 (16) |
| C3—H3 | 0.9500 | C14—H14 | 0.9500 |
| C4—C5 | 1.3869 (18) | C15—C16 | 1.4025 (16) |
| C5—C6 | 1.3862 (17) | C16—H16 | 0.9500 |
| C5—H5 | 0.9500 | ||
| O3—N1—O4 | 125.41 (11) | C9—C8—N2 | 120.89 (11) |
| O3—N1—C2 | 116.47 (10) | C9—C8—H8 | 119.6 |
| O4—N1—C2 | 118.08 (10) | N2—C8—H8 | 119.6 |
| C16—N2—C8 | 121.77 (11) | C8—C9—C10 | 119.69 (11) |
| C16—N2—H2 | 121.1 (13) | C8—C9—H9 | 120.2 |
| C8—N2—H2 | 116.6 (13) | C10—C9—H9 | 120.2 |
| C6—C1—C2 | 116.80 (10) | C9—C10—C11 | 123.14 (11) |
| C6—C1—C7 | 119.68 (10) | C9—C10—C15 | 118.36 (11) |
| C2—C1—C7 | 123.42 (10) | C11—C10—C15 | 118.50 (11) |
| C3—C2—C1 | 124.21 (10) | C12—C11—C10 | 119.70 (12) |
| C3—C2—N1 | 115.37 (9) | C12—C11—H11 | 120.2 |
| C1—C2—N1 | 120.38 (9) | C10—C11—H11 | 120.2 |
| C2—C3—C4 | 116.52 (10) | C11—C12—C13 | 121.55 (12) |
| C2—C3—H3 | 121.7 | C11—C12—H12 | 119.2 |
| C4—C3—H3 | 121.7 | C13—C12—H12 | 119.2 |
| C3—C4—C5 | 121.97 (10) | C14—C13—C12 | 120.33 (12) |
| C3—C4—Cl1 | 117.91 (9) | C14—C13—H13 | 119.8 |
| C5—C4—Cl1 | 120.12 (9) | C12—C13—H13 | 119.8 |
| C6—C5—C4 | 119.35 (11) | C13—C14—C15 | 119.39 (12) |
| C6—C5—H5 | 120.3 | C13—C14—H14 | 120.3 |
| C4—C5—H5 | 120.3 | C15—C14—H14 | 120.3 |
| C5—C6—C1 | 121.06 (11) | C16—C15—C14 | 121.11 (11) |
| C5—C6—H6 | 119.5 | C16—C15—C10 | 118.34 (10) |
| C1—C6—H6 | 119.5 | C14—C15—C10 | 120.53 (11) |
| O2—C7—O1 | 126.47 (11) | N2—C16—C15 | 120.90 (11) |
| O2—C7—C1 | 118.47 (11) | N2—C16—H16 | 119.6 |
| O1—C7—C1 | 115.02 (9) | C15—C16—H16 | 119.6 |
| C6—C1—C2—C3 | −2.85 (16) | C2—C1—C7—O1 | −24.68 (15) |
| C7—C1—C2—C3 | 173.44 (10) | C16—N2—C8—C9 | 1.66 (18) |
| C6—C1—C2—N1 | 174.65 (10) | N2—C8—C9—C10 | −0.10 (19) |
| C7—C1—C2—N1 | −9.05 (16) | C8—C9—C10—C11 | 178.39 (11) |
| O3—N1—C2—C3 | 110.00 (12) | C8—C9—C10—C15 | −1.62 (17) |
| O4—N1—C2—C3 | −67.61 (14) | C9—C10—C11—C12 | 179.31 (11) |
| O3—N1—C2—C1 | −67.71 (14) | C15—C10—C11—C12 | −0.68 (17) |
| O4—N1—C2—C1 | 114.67 (12) | C10—C11—C12—C13 | 0.57 (19) |
| C1—C2—C3—C4 | 1.06 (17) | C11—C12—C13—C14 | −0.04 (19) |
| N1—C2—C3—C4 | −176.56 (10) | C12—C13—C14—C15 | −0.36 (19) |
| C2—C3—C4—C5 | 1.76 (17) | C13—C14—C15—C16 | 178.64 (11) |
| C2—C3—C4—Cl1 | −178.43 (8) | C13—C14—C15—C10 | 0.24 (17) |
| C3—C4—C5—C6 | −2.62 (18) | C9—C10—C15—C16 | 1.85 (15) |
| Cl1—C4—C5—C6 | 177.57 (9) | C11—C10—C15—C16 | −178.16 (10) |
| C4—C5—C6—C1 | 0.69 (18) | C9—C10—C15—C14 | −179.71 (10) |
| C2—C1—C6—C5 | 1.91 (16) | C11—C10—C15—C14 | 0.28 (16) |
| C7—C1—C6—C5 | −174.53 (10) | C8—N2—C16—C15 | −1.40 (17) |
| C6—C1—C7—O2 | −26.60 (16) | C14—C15—C16—N2 | −178.81 (10) |
| C2—C1—C7—O2 | 157.21 (11) | C10—C15—C16—N2 | −0.38 (16) |
| C6—C1—C7—O1 | 151.51 (11) |
| H··· | ||||
| N2—H2···O1 | 0.91 (2) | 1.67 (2) | 2.5738 (14) | 169 (2) |
| C3—H3···O2i | 0.95 | 2.21 | 3.1580 (15) | 174 |
| C13—H13···O3ii | 0.95 | 2.52 | 3.3405 (19) | 145 |
| C16—H16···O1iii | 0.95 | 2.43 | 3.3477 (15) | 163 |