| Literature DB >> 22199737 |
Kazuma Gotoh1, Hiroyuki Ishida.
Abstract
In the title co-crystal, 2C(7)H(4)ClNO(4)·C(4)H(4)N(2), the pyrazine mol-ecule is located on an inversion centre, so that the asymmetric unit consists of one mol-ecule of 4-chloro-2-nitro-benzoic acid and a half-mol-ecule of pyrazine. The components are connected by O-H⋯N and C-H⋯O hydrogen bonds, forming a 2:1 unit. In the hydrogen-bonded unit, the dihedral angle between the pyrazine ring and the benzene ring of the benzoic acid is 16.55 (4)°. The units are linked by inter-molecular C-H⋯O hydrogen bonds, forming a sheet structure parallel to ([Formula: see text]04). A C-H⋯O hydrogen-bond linkage is also observed between these sheets.Entities:
Year: 2011 PMID: 22199737 PMCID: PMC3238884 DOI: 10.1107/S1600536811046113
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C7H4ClNO4·C4H4N2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 16875 reflections |
| θ = 3.0–30.1° | |
| µ = 0.39 mm−1 | |
| β = 90.858 (2)° | Block, colorless |
| 0.35 × 0.15 × 0.11 mm | |
| Rigaku R-AXIS RAPID II diffractometer | 2535 reflections with |
| Detector resolution: 10.00 pixels mm-1 | |
| ω scans | θmax = 30.0° |
| Absorption correction: numerical ( | |
| 19734 measured reflections | |
| 2833 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2833 reflections | (Δ/σ)max = 0.001 |
| 149 parameters | Δρmax = 0.51 e Å−3 |
| 0 restraints | Δρmin = −0.39 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 1.52398 (5) | 0.692432 (19) | 0.490381 (17) | 0.02257 (8) | |
| O1 | 0.69354 (15) | 0.47150 (5) | 0.18863 (5) | 0.02033 (15) | |
| O2 | 0.54429 (14) | 0.62747 (5) | 0.17436 (5) | 0.01875 (15) | |
| O3 | 0.99168 (16) | 0.77178 (6) | 0.14572 (5) | 0.02218 (16) | |
| O4 | 0.72288 (16) | 0.82806 (6) | 0.25018 (5) | 0.02337 (17) | |
| N1 | 0.89159 (16) | 0.76980 (6) | 0.22167 (5) | 0.01549 (16) | |
| N2 | 0.18864 (16) | 0.54745 (6) | 0.05617 (5) | 0.01577 (16) | |
| C1 | 0.90441 (18) | 0.59589 (7) | 0.27806 (6) | 0.01446 (17) | |
| C2 | 0.99232 (19) | 0.69339 (6) | 0.28474 (6) | 0.01377 (17) | |
| C3 | 1.18351 (19) | 0.72540 (7) | 0.34825 (6) | 0.01557 (18) | |
| H3 | 1.2416 | 0.7923 | 0.3504 | 0.019* | |
| C4 | 1.28706 (19) | 0.65599 (7) | 0.40871 (7) | 0.01698 (18) | |
| C5 | 1.2038 (2) | 0.55818 (7) | 0.40559 (7) | 0.01984 (19) | |
| H5 | 1.2757 | 0.5117 | 0.4478 | 0.024* | |
| C6 | 1.0143 (2) | 0.52883 (7) | 0.34015 (7) | 0.01845 (19) | |
| H6 | 0.9584 | 0.4617 | 0.3376 | 0.022* | |
| C7 | 0.70336 (18) | 0.55797 (7) | 0.20900 (6) | 0.01475 (17) | |
| C8 | 0.18281 (19) | 0.44916 (7) | 0.04969 (6) | 0.01661 (18) | |
| H8 | 0.3099 | 0.4109 | 0.0841 | 0.020* | |
| C9 | 0.00621 (19) | 0.59808 (7) | 0.00657 (6) | 0.01588 (18) | |
| H9 | 0.0056 | 0.6682 | 0.0098 | 0.019* | |
| H2 | 0.429 (4) | 0.6024 (14) | 0.1346 (14) | 0.050 (5)* |
| Cl1 | 0.02064 (13) | 0.02541 (14) | 0.02136 (13) | −0.00126 (9) | −0.00925 (9) | −0.00274 (9) |
| O1 | 0.0212 (3) | 0.0153 (3) | 0.0243 (4) | −0.0027 (3) | −0.0041 (3) | −0.0039 (3) |
| O2 | 0.0174 (3) | 0.0171 (3) | 0.0215 (4) | 0.0001 (3) | −0.0072 (3) | −0.0038 (3) |
| O3 | 0.0290 (4) | 0.0224 (4) | 0.0151 (3) | −0.0004 (3) | 0.0005 (3) | 0.0007 (3) |
| O4 | 0.0249 (4) | 0.0182 (3) | 0.0271 (4) | 0.0068 (3) | 0.0004 (3) | −0.0010 (3) |
| N1 | 0.0167 (4) | 0.0131 (3) | 0.0166 (4) | −0.0019 (3) | −0.0031 (3) | −0.0010 (3) |
| N2 | 0.0148 (3) | 0.0181 (4) | 0.0144 (4) | −0.0023 (3) | −0.0012 (3) | −0.0013 (3) |
| C1 | 0.0139 (4) | 0.0135 (4) | 0.0160 (4) | −0.0009 (3) | −0.0011 (3) | −0.0025 (3) |
| C2 | 0.0138 (4) | 0.0135 (4) | 0.0139 (4) | 0.0011 (3) | −0.0007 (3) | −0.0008 (3) |
| C3 | 0.0150 (4) | 0.0150 (4) | 0.0167 (4) | −0.0015 (3) | −0.0012 (3) | −0.0025 (3) |
| C4 | 0.0146 (4) | 0.0199 (4) | 0.0163 (4) | 0.0005 (3) | −0.0037 (3) | −0.0024 (3) |
| C5 | 0.0207 (4) | 0.0179 (4) | 0.0208 (4) | 0.0015 (4) | −0.0059 (4) | 0.0014 (4) |
| C6 | 0.0200 (4) | 0.0138 (4) | 0.0215 (4) | −0.0005 (3) | −0.0036 (3) | −0.0002 (3) |
| C7 | 0.0131 (4) | 0.0160 (4) | 0.0151 (4) | −0.0022 (3) | 0.0002 (3) | −0.0017 (3) |
| C8 | 0.0160 (4) | 0.0178 (4) | 0.0159 (4) | −0.0004 (3) | −0.0019 (3) | −0.0006 (3) |
| C9 | 0.0165 (4) | 0.0154 (4) | 0.0157 (4) | −0.0017 (3) | −0.0003 (3) | −0.0010 (3) |
| Cl1—C4 | 1.7313 (10) | C2—C3 | 1.3836 (12) |
| O1—C7 | 1.2095 (11) | C3—C4 | 1.3875 (13) |
| O2—C7 | 1.3183 (11) | C3—H3 | 0.9500 |
| O2—H2 | 0.88 (2) | C4—C5 | 1.3855 (14) |
| O3—N1 | 1.2323 (11) | C5—C6 | 1.3866 (13) |
| O4—N1 | 1.2195 (11) | C5—H5 | 0.9500 |
| N1—C2 | 1.4727 (12) | C6—H6 | 0.9500 |
| N2—C9 | 1.3343 (12) | C8—C9i | 1.3888 (13) |
| N2—C8 | 1.3344 (13) | C8—H8 | 0.9500 |
| C1—C2 | 1.3909 (12) | C9—C8i | 1.3888 (13) |
| C1—C6 | 1.3932 (13) | C9—H9 | 0.9500 |
| C1—C7 | 1.4964 (12) | ||
| C7—O2—H2 | 110.7 (12) | C3—C4—Cl1 | 119.32 (7) |
| O4—N1—O3 | 125.45 (9) | C4—C5—C6 | 119.28 (9) |
| O4—N1—C2 | 117.09 (8) | C4—C5—H5 | 120.4 |
| O3—N1—C2 | 117.41 (8) | C6—C5—H5 | 120.4 |
| C9—N2—C8 | 117.35 (8) | C5—C6—C1 | 121.31 (9) |
| C2—C1—C6 | 117.15 (8) | C5—C6—H6 | 119.3 |
| C2—C1—C7 | 124.91 (8) | C1—C6—H6 | 119.3 |
| C6—C1—C7 | 117.93 (8) | O1—C7—O2 | 124.96 (9) |
| C3—C2—C1 | 123.33 (8) | O1—C7—C1 | 121.69 (9) |
| C3—C2—N1 | 115.18 (8) | O2—C7—C1 | 113.35 (8) |
| C1—C2—N1 | 121.47 (8) | N2—C8—C9i | 121.03 (8) |
| C2—C3—C4 | 117.45 (9) | N2—C8—H8 | 119.5 |
| C2—C3—H3 | 121.3 | C9i—C8—H8 | 119.5 |
| C4—C3—H3 | 121.3 | N2—C9—C8i | 121.62 (9) |
| C5—C4—C3 | 121.48 (9) | N2—C9—H9 | 119.2 |
| C5—C4—Cl1 | 119.20 (7) | C8i—C9—H9 | 119.2 |
| C6—C1—C2—C3 | 1.03 (14) | C3—C4—C5—C6 | 0.51 (15) |
| C7—C1—C2—C3 | −178.46 (9) | Cl1—C4—C5—C6 | −179.92 (8) |
| C6—C1—C2—N1 | 179.18 (9) | C4—C5—C6—C1 | −0.57 (15) |
| C7—C1—C2—N1 | −0.31 (14) | C2—C1—C6—C5 | −0.16 (15) |
| O4—N1—C2—C3 | −77.08 (11) | C7—C1—C6—C5 | 179.36 (9) |
| O3—N1—C2—C3 | 100.39 (10) | C2—C1—C7—O1 | 157.90 (10) |
| O4—N1—C2—C1 | 104.62 (10) | C6—C1—C7—O1 | −21.58 (14) |
| O3—N1—C2—C1 | −77.91 (11) | C2—C1—C7—O2 | −22.11 (13) |
| C1—C2—C3—C4 | −1.09 (14) | C6—C1—C7—O2 | 158.41 (9) |
| N1—C2—C3—C4 | −179.35 (8) | C9—N2—C8—C9i | −0.01 (15) |
| C2—C3—C4—C5 | 0.29 (15) | C8—N2—C9—C8i | 0.01 (15) |
| C2—C3—C4—Cl1 | −179.28 (7) |
| H··· | ||||
| O2—H2···N2 | 0.88 (2) | 1.80 (2) | 2.6739 (10) | 178 (2) |
| C3—H3···O1ii | 0.95 | 2.51 | 3.4305 (12) | 162 |
| C6—H6···O3iii | 0.95 | 2.59 | 3.4865 (13) | 157 |
| C8—H8···O1 | 0.95 | 2.55 | 3.2201 (12) | 128 |
| C9—H9···O3iv | 0.95 | 2.45 | 3.1273 (12) | 128 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2⋯N2 | 0.88 (2) | 1.80 (2) | 2.6739 (10) | 178 (2) |
| C3—H3⋯O1i | 0.95 | 2.51 | 3.4305 (12) | 162 |
| C6—H6⋯O3ii | 0.95 | 2.59 | 3.4865 (13) | 157 |
| C8—H8⋯O1 | 0.95 | 2.55 | 3.2201 (12) | 128 |
| C9—H9⋯O3iii | 0.95 | 2.45 | 3.1273 (12) | 128 |
Symmetry codes: (i) ; (ii) ; (iii) .