Literature DB >> 22199737

4-Chloro-2-nitro-benzoic acid-pyrazine (2/1).

Kazuma Gotoh1, Hiroyuki Ishida.   

Abstract

In the title co-crystal, 2C(7)H(4)ClNO(4)·C(4)H(4)N(2), the pyrazine mol-ecule is located on an inversion centre, so that the asymmetric unit consists of one mol-ecule of 4-chloro-2-nitro-benzoic acid and a half-mol-ecule of pyrazine. The components are connected by O-H⋯N and C-H⋯O hydrogen bonds, forming a 2:1 unit. In the hydrogen-bonded unit, the dihedral angle between the pyrazine ring and the benzene ring of the benzoic acid is 16.55 (4)°. The units are linked by inter-molecular C-H⋯O hydrogen bonds, forming a sheet structure parallel to ([Formula: see text]04). A C-H⋯O hydrogen-bond linkage is also observed between these sheets.

Entities:  

Year:  2011        PMID: 22199737      PMCID: PMC3238884          DOI: 10.1107/S1600536811046113

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Gotoh & Ishida (2009 ▶); Gotoh et al. (2010 ▶); Ishida et al. (2001 ▶).

Experimental

Crystal data

2C7H4ClNO4·C4H4N2 M = 483.22 Monoclinic, a = 4.87662 (13) Å b = 13.5385 (3) Å c = 14.7981 (6) Å β = 90.858 (2)° V = 976.89 (5) Å3 Z = 2 Mo Kα radiation μ = 0.39 mm−1 T = 110 K 0.35 × 0.15 × 0.11 mm

Data collection

Rigaku R-AXIS RAPID II diffractometer Absorption correction: numerical (NUMABS; Higashi, 1999 ▶) T min = 0.904, T max = 0.958 19734 measured reflections 2833 independent reflections 2535 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.081 S = 1.07 2833 reflections 149 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.51 e Å−3 Δρmin = −0.39 e Å−3 Data collection: PROCESS-AUTO (Rigaku/MSC, 2004 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2004 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811046113/fj2468sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811046113/fj2468Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811046113/fj2468Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C7H4ClNO4·C4H4N2F(000) = 492.00
Mr = 483.22Dx = 1.643 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71075 Å
Hall symbol: -P 2ybcCell parameters from 16875 reflections
a = 4.87662 (13) Åθ = 3.0–30.1°
b = 13.5385 (3) ŵ = 0.39 mm1
c = 14.7981 (6) ÅT = 110 K
β = 90.858 (2)°Block, colorless
V = 976.89 (5) Å30.35 × 0.15 × 0.11 mm
Z = 2
Rigaku R-AXIS RAPID II diffractometer2535 reflections with I > 2σ(I)
Detector resolution: 10.00 pixels mm-1Rint = 0.032
ω scansθmax = 30.0°
Absorption correction: numerical (NUMABS; Higashi, 1999)h = −6→6
Tmin = 0.904, Tmax = 0.958k = −19→19
19734 measured reflectionsl = −20→20
2833 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0499P)2 + 0.2334P] where P = (Fo2 + 2Fc2)/3
2833 reflections(Δ/σ)max = 0.001
149 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.52398 (5)0.692432 (19)0.490381 (17)0.02257 (8)
O10.69354 (15)0.47150 (5)0.18863 (5)0.02033 (15)
O20.54429 (14)0.62747 (5)0.17436 (5)0.01875 (15)
O30.99168 (16)0.77178 (6)0.14572 (5)0.02218 (16)
O40.72288 (16)0.82806 (6)0.25018 (5)0.02337 (17)
N10.89159 (16)0.76980 (6)0.22167 (5)0.01549 (16)
N20.18864 (16)0.54745 (6)0.05617 (5)0.01577 (16)
C10.90441 (18)0.59589 (7)0.27806 (6)0.01446 (17)
C20.99232 (19)0.69339 (6)0.28474 (6)0.01377 (17)
C31.18351 (19)0.72540 (7)0.34825 (6)0.01557 (18)
H31.24160.79230.35040.019*
C41.28706 (19)0.65599 (7)0.40871 (7)0.01698 (18)
C51.2038 (2)0.55818 (7)0.40559 (7)0.01984 (19)
H51.27570.51170.44780.024*
C61.0143 (2)0.52883 (7)0.34015 (7)0.01845 (19)
H60.95840.46170.33760.022*
C70.70336 (18)0.55797 (7)0.20900 (6)0.01475 (17)
C80.18281 (19)0.44916 (7)0.04969 (6)0.01661 (18)
H80.30990.41090.08410.020*
C90.00621 (19)0.59808 (7)0.00657 (6)0.01588 (18)
H90.00560.66820.00980.019*
H20.429 (4)0.6024 (14)0.1346 (14)0.050 (5)*
U11U22U33U12U13U23
Cl10.02064 (13)0.02541 (14)0.02136 (13)−0.00126 (9)−0.00925 (9)−0.00274 (9)
O10.0212 (3)0.0153 (3)0.0243 (4)−0.0027 (3)−0.0041 (3)−0.0039 (3)
O20.0174 (3)0.0171 (3)0.0215 (4)0.0001 (3)−0.0072 (3)−0.0038 (3)
O30.0290 (4)0.0224 (4)0.0151 (3)−0.0004 (3)0.0005 (3)0.0007 (3)
O40.0249 (4)0.0182 (3)0.0271 (4)0.0068 (3)0.0004 (3)−0.0010 (3)
N10.0167 (4)0.0131 (3)0.0166 (4)−0.0019 (3)−0.0031 (3)−0.0010 (3)
N20.0148 (3)0.0181 (4)0.0144 (4)−0.0023 (3)−0.0012 (3)−0.0013 (3)
C10.0139 (4)0.0135 (4)0.0160 (4)−0.0009 (3)−0.0011 (3)−0.0025 (3)
C20.0138 (4)0.0135 (4)0.0139 (4)0.0011 (3)−0.0007 (3)−0.0008 (3)
C30.0150 (4)0.0150 (4)0.0167 (4)−0.0015 (3)−0.0012 (3)−0.0025 (3)
C40.0146 (4)0.0199 (4)0.0163 (4)0.0005 (3)−0.0037 (3)−0.0024 (3)
C50.0207 (4)0.0179 (4)0.0208 (4)0.0015 (4)−0.0059 (4)0.0014 (4)
C60.0200 (4)0.0138 (4)0.0215 (4)−0.0005 (3)−0.0036 (3)−0.0002 (3)
C70.0131 (4)0.0160 (4)0.0151 (4)−0.0022 (3)0.0002 (3)−0.0017 (3)
C80.0160 (4)0.0178 (4)0.0159 (4)−0.0004 (3)−0.0019 (3)−0.0006 (3)
C90.0165 (4)0.0154 (4)0.0157 (4)−0.0017 (3)−0.0003 (3)−0.0010 (3)
Cl1—C41.7313 (10)C2—C31.3836 (12)
O1—C71.2095 (11)C3—C41.3875 (13)
O2—C71.3183 (11)C3—H30.9500
O2—H20.88 (2)C4—C51.3855 (14)
O3—N11.2323 (11)C5—C61.3866 (13)
O4—N11.2195 (11)C5—H50.9500
N1—C21.4727 (12)C6—H60.9500
N2—C91.3343 (12)C8—C9i1.3888 (13)
N2—C81.3344 (13)C8—H80.9500
C1—C21.3909 (12)C9—C8i1.3888 (13)
C1—C61.3932 (13)C9—H90.9500
C1—C71.4964 (12)
C7—O2—H2110.7 (12)C3—C4—Cl1119.32 (7)
O4—N1—O3125.45 (9)C4—C5—C6119.28 (9)
O4—N1—C2117.09 (8)C4—C5—H5120.4
O3—N1—C2117.41 (8)C6—C5—H5120.4
C9—N2—C8117.35 (8)C5—C6—C1121.31 (9)
C2—C1—C6117.15 (8)C5—C6—H6119.3
C2—C1—C7124.91 (8)C1—C6—H6119.3
C6—C1—C7117.93 (8)O1—C7—O2124.96 (9)
C3—C2—C1123.33 (8)O1—C7—C1121.69 (9)
C3—C2—N1115.18 (8)O2—C7—C1113.35 (8)
C1—C2—N1121.47 (8)N2—C8—C9i121.03 (8)
C2—C3—C4117.45 (9)N2—C8—H8119.5
C2—C3—H3121.3C9i—C8—H8119.5
C4—C3—H3121.3N2—C9—C8i121.62 (9)
C5—C4—C3121.48 (9)N2—C9—H9119.2
C5—C4—Cl1119.20 (7)C8i—C9—H9119.2
C6—C1—C2—C31.03 (14)C3—C4—C5—C60.51 (15)
C7—C1—C2—C3−178.46 (9)Cl1—C4—C5—C6−179.92 (8)
C6—C1—C2—N1179.18 (9)C4—C5—C6—C1−0.57 (15)
C7—C1—C2—N1−0.31 (14)C2—C1—C6—C5−0.16 (15)
O4—N1—C2—C3−77.08 (11)C7—C1—C6—C5179.36 (9)
O3—N1—C2—C3100.39 (10)C2—C1—C7—O1157.90 (10)
O4—N1—C2—C1104.62 (10)C6—C1—C7—O1−21.58 (14)
O3—N1—C2—C1−77.91 (11)C2—C1—C7—O2−22.11 (13)
C1—C2—C3—C4−1.09 (14)C6—C1—C7—O2158.41 (9)
N1—C2—C3—C4−179.35 (8)C9—N2—C8—C9i−0.01 (15)
C2—C3—C4—C50.29 (15)C8—N2—C9—C8i0.01 (15)
C2—C3—C4—Cl1−179.28 (7)
D—H···AD—HH···AD···AD—H···A
O2—H2···N20.88 (2)1.80 (2)2.6739 (10)178 (2)
C3—H3···O1ii0.952.513.4305 (12)162
C6—H6···O3iii0.952.593.4865 (13)157
C8—H8···O10.952.553.2201 (12)128
C9—H9···O3iv0.952.453.1273 (12)128
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N20.88 (2)1.80 (2)2.6739 (10)178 (2)
C3—H3⋯O1i0.952.513.4305 (12)162
C6—H6⋯O3ii0.952.593.4865 (13)157
C8—H8⋯O10.952.553.2201 (12)128
C9—H9⋯O3iii0.952.453.1273 (12)128

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  2:1 complexes of 2-chloro-4-nitrobenzoic acid and 2-chloro-5-nitrobenzoic acid with pyrazine.

Authors:  H Ishida; B Rahman; S Kashino
Journal:  Acta Crystallogr C       Date:  2001-07-09       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Hydrogen-bonded structures of the isomeric compounds of quinoline with 2-chloro-5-nitrobenzoic acid, 3-chloro-2-nitrobenzoic acid, 4-chloro-2-nitrobenzoic acid and 5-chloro-2-nitrobenzoic acid.

Authors:  Kazuma Gotoh; Hiroyuki Ishida
Journal:  Acta Crystallogr C       Date:  2009-09-30       Impact factor: 1.172

4.  4-Chloro-benzoic acid-quinoline (1/1).

Authors:  Kazuma Gotoh; Kaori Katagiri; Hiroyuki Ishida
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-17

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  Crystal structures of iso-quinoline-3-chloro-2-nitro-benzoic acid (1/1) and isoquinolinium 4-chloro-2-nitro-benzoate.

Authors:  Kazuma Gotoh; Hiroyuki Ishida
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-01
  1 in total

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