| Literature DB >> 25695485 |
C-F Xu1, T Johnson1, J Garcia-Donas2, T K Choueiri3, C N Sternberg4, I D Davis5, N Bing6, K C Deen7, Z Xue6, L McCann7, E Esteban8, J C Whittaker1, C F Spraggs1, C Rodríguez-Antona9, L N Pandite6, R J Motzer10.
Abstract
BACKGROUND: We evaluated germline single nucleotide polymorphisms (SNPs) for association with overall survival (OS) in pazopanib- or sunitinib-treated patients with advanced renal cell carcinoma (aRCC).Entities:
Mesh:
Substances:
Year: 2015 PMID: 25695485 PMCID: PMC4385958 DOI: 10.1038/bjc.2015.64
Source DB: PubMed Journal: Br J Cancer ISSN: 0007-0920 Impact factor: 7.640
Demographic and clinical characteristics of patients in the three studies
| Age, median years (range) | 60 (25–85) | 61 (18–86) | 65 (55–73) |
| Male | 170 (71) | 552 (76) | 61 (69) |
| White | 209 (87) | 453 (62) | 87 (98) |
| Non-white | 32 (13) | 276 (38) | 2 (2) |
| Body mass index, median kg m−2 (range) | 26 (14–46) | 26 (15–55) | NA |
| ECOG 0/KS 90–100 | 93 (39) | 556 (76) | 23 (28) |
| ECOG 1/KS 70–80 | 144 (60) | 167 (23) | 53 (64) |
| ECOG 2/KS ⩽60/missing | 4 (2) | 6 (1) | 13 (14) |
| Favourable risk | 94 (39) | 211 (29) | 27 (30) |
| Intermediate risk | 130 (54) | 420 (58) | 44 (49) |
| Poor risk | 2 (1) | 73 (10) | 2 (2) |
| Unknown | 15 (6) | 25 (3) | 16 (18) |
| ⩽1 year | 74 (31) | 400 (55) | 47 (53) |
| >1 year | 139 (58) | 329 (45) | 42 (47) |
| Missing data | 28 (12) | 0 | 0 |
| Yes | 216 (90) | 611 (84) | 76 (85) |
| No | 23 (10) | 118 (16) | 13 (15) |
| Missing data | 2 (<1) | 0 | 0 |
| ⩽1·5 × ULN | 215 (89) | 673 (92) | 82 (92) |
| >1·5 × ULN | 16 (7) | 45 (6) | 4 (4) |
| Missing data | 10 (4) | 11 (2) | 3 (3) |
| ⩾LLN | 129 (54) | 445 (61) | 55 (62) |
| <LLN | 104 (43) | 284 (39) | 33 (37) |
| Missing data | 8 (3) | 0 | 1 (1) |
| Treatment-naive | 128 (53) | 729 (100) | 89 (100) |
| Cytokine-pretreated | 105 (44) | 0 | 0 |
| Missing data | 8 (3) | 0 | 0 |
| ⩽ULN | 194 (81) | 643 (88) | 0 |
| >ULN | 39 (16) | 82 (11) | 0 |
| Missing data | 8 (3) | 4 (1) | 89 (100) |
| ⩽ULN | 184 (76) | 629 (86) | 0 |
| >ULN | 49 (20) | 98 (13) | 0 |
| Missing data | 8 (3) | 2 (<1) | 89 (100) |
| PFS, median weeks (95% CI) | 38 (28–52) | 48 (38–49) | 55 (33–77) |
| OS, median months (95% CI) | 25 (22–28) | 32 (28–36) | 27 (17–37) |
| Tumour objective response, n (%) | 83 (37) | 241 (33) | 39 (49) |
Abbreviations: CI=confidence interval; ECOG PS=Eastern Cooperative Oncology Group performance status; KS=Karnofsky score; LDH=lactate dehydrogenase; LLN=lower limit of normal range; MSKCC=Memorial Sloan-Kettering Cancer Center; OS=overall survival; PFS=progression-free survival; ULN=upper limit of normal range.
One patient had missing baseline ECOG PS. All patients with ECOG PS of 2 or missing were from study VEG107769, had been randomised to the placebo arm of VEG105192, and later experienced disease progression while on treatment or during the follow-up period.
Objective response represents complete response and partial response.
Nine had missing data, 49%=39 complete + partial responses/80 patients with data.
Effect of baseline factors on overall survival in pazopanib-treated patients in the univariate and multivariate cox regression model in discovery study 1
| Age, increase/year | 1.00 (0.98–1.01) | 0.9 | — | — |
| Sex, female | 1.24 (0.88–1.73) | 0.2 | — | — |
| Race, self-reported other | 0.92 (0.57–1.48) | 0.7 | — | — |
| BMI, per kg m−2 | 0.95 (0.91–0.98) | 0.002 | 0.95 (0.92–0.99) | 0.008 |
| MSKCC risk score, intermediate/poor | 1.93 (1.37–2.73) | 0.0002 | — | — |
| ECOG PS, 1 or 2 | 1.73 (1.25–2.42) | 0.001 | 1.63 (1.12–2.38) | 0.01 |
| Haemoglobin, <LLN | 1.53 (1.12–2.10) | 0.008 | — | — |
| LDH, >1.5 × ULN | 2.50 (1.41–4.42) | 0.002 | — | — |
| Prior nephrectomy status, no | 1.33 (0.81–2.21) | 0.3 | — | — |
| Prior systemic treatment, treatment-naive | 1.24 (0.90–1.71) | 0.2 | — | — |
| Number of disease sites, ≥3 | 1.24 (0.90–1.71) | 0.003 | 1.56 (1.08–2.24) | 0.02 |
| Time from initial diagnosis to study entry, ≤1 year | 1.81 (1.29–2.54) | 0.0006 | 1.50 (1.05–2.15) | 0.03 |
| Neutrophil count, ULN | 1.82 (1.23–2.69) | 0.003 | 1.66 (1.08–2.55) | 0.02 |
| Platelet count, >ULN | 1.24 (0.86–1.80) | 0.3 | — | — |
| Study, VEG105192 | 1.06 (0.72–1.56) | 0.8 | — | — |
Abbreviations: BMI=body mass index; CI=confidence interval; ECOG PS=Eastern Cooperative Oncology Group performance status; HR=hazard ratio; LDH=lactate dehydrogenase; LLN=lower limit of normal range; MSKCC=Memorial Sloan-Kettering Cancer Center; ULN=upper limit of normal range.
For the multivariate model, HR and P values were shown for the final set of stepwise selected variables only; these variables were included as covariate(s) in the analysis of the effect of each genetic marker.
These factors are also included in the calculation of the MSKCC risk score (Motzer , 2002).
Association between genetic markers and overall survival in pazopanib-treated patients in discovery study 1
| −392A>G | rs2740574 | G 4.8 | 0.5 | 0.78 (0.39–1.55) | |
| 6986A>G | rs776746 | A 11.8 | 0.98 | 1.00 (0.68–1.45) | |
| −25385C>T | rs3814055 | T 39.0 | 0.02 | 1.34 (1.04–1.73) | |
| 7635A>G | rs6785049 | G 40.6 | 0.7 | 0.96 (0.74–1.24) | |
| 10620C>T | rs1054190 | T 9.0 | 0.7 | 1.11 (0.71–1.73) | |
| 1236C>T | rs1128503 | T 43.2 | 0.054 | 1.25 (1.00–1.58) | |
| 2677G>T/A (A893S/T) | rs2032582 | T/A 45.4 | 0.3 | 1.14 (0.89–1.47) | |
| 3435C>T | rs1045642 | T 47.7 | 0.1 | 1.22 (0.94–1.58) | |
| 34G>A (V12M) | rs2231137 | A 9.0 | 0.5 | 0.85 (0.55–1.33) | |
| 421C>A (Q141K) | rs2231142 | A 13.5 | 0.7 | 1.06 (0.74–1.53) | |
| 869C>T (Q126X) | rs72552713 | T 0.4 | 0.03 | 4.81 (1.15–20.18) | |
| −2578A>C | rs699947 | C 47.9 | 0.2 | 0.85 (0.66–1.09) | |
| −1498C>T | rs833061 | T 47.7 | 0.2 | 0.85 (0.66–1.09) | |
| −1154G>A | rs1570360 | A 33.5 | 0.09 | 1.25 (0.96–1.63) | |
| −634G>C | rs2010963 | C 27.8 | 0.2 | 0.83 (0.62–1.11) | |
| 936C>T | rs3025039 | T 15.3 | 0.4 | 1.15 (0.82–1.62) | |
| −604T>C | rs2071559 | C 43.5 | 0.4 | 0.90 (0.70–1.14) | |
| 889G>A (V297I) | rs2305948 | A 8.9 | 0.4 | 1.20 (0.77–1.86) | |
| 1416A>T (Q472H) | rs1870377 | T 22.6 | 0.3 | 0.86 (0.64–1.16) | |
| 1480A>G (T494A) | rs307826 | G 8.6 | 0.2 | 1.36 (0.85–2.19) | |
| −573G>T | rs1800812 | T 21.7 | 0.3 | 0.86 (0.66–1.13) | |
| 2767A>T | rs1126647 | T 42.8 | 0.007 | 1.45 (1.11–1.91) | |
| −251T>A | rs4073 | A 49.8 | 0.02 | 1.36 (1.04–1.76) | |
| 224C>T | rs1449683 | T 8.8 | 0.3 | 1.29 (0.78–2.12) | |
| IVS2 +906C>T | rs2981582 | T 38.8 | 0.008 | 1.40 (1.09–1.81) | |
| 1772C>T (P582S) | rs11549465 | T 10.3 | 0.6 | 0.88 (0.58–1.34) | |
| 1790G>A (A588T) | rs11549467 | A 3.2 | 0.6 | 0.84 (0.42–1.65) |
Abbreviations: CI=confidence interval; HR=hazard ratio.
The HR and P values were from additive genetic models. The P values were nominal values without adjustment for the number of SNPs tested; HR values represent the per variant allele allelic HR.
Although the ABCG2 rs72552713 was nominally significantly associated with overall survival, this association was driven by the only two patients with the variant CT genotype, and thus was not further discussed in this manuscript.
Figure 1Overall survival Kaplan–Meier curves for patients by each IL8 2767A>T (rs1126647) genotype. (A) Pazopanib-treated patients in discovery study 1 (from NCT00334282 and NCT00387764): of the 241 patients, 223 had IL8 genotype data and were included in this plot (including the 37 patients who had missing data for baseline factors). The remaining 18 patients had missing genotype data. (B) Pazopanib- or sunitinib-treated patients in confirmation study 2 (from COMPARZ): of the 729 patients, 719 had IL8 genotype data and were included in this plot (including the 29 patients who had missing data for baseline factors). Ten patients had missing genotype data. (C) Sunitinib-treated patients in confirmation study 3 (SOGUG study): 88 of the 89 patients had IL8 genotype data and were included in this plot; one patient had missing genotype data. The curves show the proportion of patients in each genotype group who survived (y axis) vs time in months (x axis). Vertical bars on the survival curves indicate censored observations. The HR was adjusted for covariates comparing each of the variant genotype (AT or TT) with the reference genotype (AA). AA, reference genotype; AT, variant heterozygote genotype; TT, variant homozygote genotype.
Figure 2Forest plot of meta-analysis association results between IL8 rs1126647 polymorphism and OS across three independent studies (with confirmation study 2 split into pazopanib- and sunitinib-treated subgroups). The HR was per variant T allele compared with reference A allele using an additive genetic model.
Figure 3Overall survival (OS) Kaplan–Meier curves for IL8 2767A>T (rs1126647) genotype in confirmation study 2 (from COMPARZ) for (A) pazopanib-treated patients and (B) sunitinib-treated patients. Of the 729 patients, 719 had IL8 genotype data and were included in this plot (including the 29 patients who had missing data for baseline factors). Ten patients had missing genotype data. AA, reference genotype; AT, variant heterozygote genotype; TT, variant homozygote genotype.