Literature DB >> 19585639

Spatiotemporal kinetics in solution studied by time-resolved X-ray liquidography (solution scattering).

Tae Kyu Kim1, Jae Hyuk Lee, Michael Wulff, Qingyu Kong, Hyotcherl Ihee.   

Abstract

Information about temporally varying molecular structure during chemical processes is crucial for understanding the mechanism and function of a chemical reaction. Using ultrashort optical pulses to trigger a reaction in solution and using time-resolved X-ray diffraction (scattering) to interrogate the structural changes in the molecules, time-resolved X-ray liquidography (TRXL) is a direct tool for probing structural dynamics for chemical reactions in solution. TRXL can provide direct structural information that is difficult to extract from ultrafast optical spectroscopy, such as the time dependence of bond lengths and angles of all molecular species including short-lived intermediates over a wide range of times, from picoseconds to milliseconds. TRXL elegantly complements ultrafast optical spectroscopy because the diffraction signals are sensitive to all chemical species simultaneously and the diffraction signal from each chemical species can be quantitatively calculated from its three-dimensional atomic coordinates and compared with experimental TRXL data. Since X-rays scatter from all the atoms in the solution sample, solutes as well as the solvent, the analysis of TRXL data can provide the temporal behavior of the solvent as well as the structural progression of all the solute molecules in all the reaction pathways, thus providing a global picture of the reactions and accurate branching ratios between multiple reaction pathways. The arrangement of the solvent around the solute molecule can also be extracted. This review summarizes recent developments in TRXL, including technical innovations in synchrotron beamlines and theoretical analysis of TRXL data, as well as several examples from simple molecules to an organometallic complex, nanoparticles, and proteins in solution. Future potential applications of TRXL in femtosecond studies and biologically relevant molecules are also briefly mentioned.

Entities:  

Year:  2009        PMID: 19585639     DOI: 10.1002/cphc.200900154

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  15 in total

1.  Direct observation of bond formation in solution with femtosecond X-ray scattering.

Authors:  Kyung Hwan Kim; Jong Goo Kim; Shunsuke Nozawa; Tokushi Sato; Key Young Oang; Tae Wu Kim; Hosung Ki; Junbeom Jo; Sungjun Park; Changyong Song; Takahiro Sato; Kanade Ogawa; Tadashi Togashi; Kensuke Tono; Makina Yabashi; Tetsuya Ishikawa; Joonghan Kim; Ryong Ryoo; Jeongho Kim; Hyotcherl Ihee; Shin-ichi Adachi
Journal:  Nature       Date:  2015-02-19       Impact factor: 49.962

2.  Anisotropic Picosecond X-ray Solution Scattering from Photo-selectively Aligned Protein Molecules.

Authors:  Jeongho Kim; Kyung Hwan Kim; Jong Goo Kim; Tae Wu Kim; Youngmin Kim; Hyotcherl Ihee
Journal:  J Phys Chem Lett       Date:  2011-02-02       Impact factor: 6.475

3.  Combined probes of X-ray scattering and optical spectroscopy reveal how global conformational change is temporally and spatially linked to local structural perturbation in photoactive yellow protein.

Authors:  Tae Wu Kim; Cheolhee Yang; Youngmin Kim; Jong Goo Kim; Jeongho Kim; Yang Ouk Jung; Sunhong Jun; Sang Jin Lee; Sungjun Park; Irina Kosheleva; Robert Henning; Jasper J van Thor; Hyotcherl Ihee
Journal:  Phys Chem Chem Phys       Date:  2016-04-07       Impact factor: 3.676

4.  Sub-100-ps structural dynamics of horse heart myoglobin probed by time-resolved X-ray solution scattering.

Authors:  Key Young Oang; Kyung Hwan Kim; Junbeom Jo; Youngmin Kim; Jong Goo Kim; Tae Wu Kim; Sunhong Jun; Jeongho Kim; Hyotcherl Ihee
Journal:  Chem Phys       Date:  2014-10-17       Impact factor: 2.348

Review 5.  Reaction dynamics studied via femtosecond X-ray liquidography at X-ray free-electron lasers.

Authors:  Eun Hyuk Choi; Yunbeom Lee; Jun Heo; Hyotcherl Ihee
Journal:  Chem Sci       Date:  2022-06-06       Impact factor: 9.969

Review 6.  Micrographia of the twenty-first century: from camera obscura to 4D microscopy.

Authors:  Ahmed H Zewail
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2010-03-13       Impact factor: 4.226

7.  Atomistic characterization of the active-site solvation dynamics of a model photocatalyst.

Authors:  Tim B van Driel; Kasper S Kjær; Robert W Hartsock; Asmus O Dohn; Tobias Harlang; Matthieu Chollet; Morten Christensen; Wojciech Gawelda; Niels E Henriksen; Jong Goo Kim; Kristoffer Haldrup; Kyung Hwan Kim; Hyotcherl Ihee; Jeongho Kim; Henrik Lemke; Zheng Sun; Villy Sundström; Wenkai Zhang; Diling Zhu; Klaus B Møller; Martin M Nielsen; Kelly J Gaffney
Journal:  Nat Commun       Date:  2016-11-28       Impact factor: 14.919

8.  SVD-aided pseudo principal-component analysis: A new method to speed up and improve determination of the optimum kinetic model from time-resolved data.

Authors:  Key Young Oang; Cheolhee Yang; Srinivasan Muniyappan; Jeongho Kim; Hyotcherl Ihee
Journal:  Struct Dyn       Date:  2017-04-05       Impact factor: 2.920

9.  Femtosecond X-ray solution scattering reveals that bond formation mechanism of a gold trimer complex is independent of excitation wavelength.

Authors:  Kyung Hwan Kim; Jong Goo Kim; Key Young Oang; Tae Wu Kim; Hosung Ki; Junbeom Jo; Jeongho Kim; Tokushi Sato; Shunsuke Nozawa; Shin-Ichi Adachi; Hyotcherl Ihee
Journal:  Struct Dyn       Date:  2016-04-29       Impact factor: 2.920

Review 10.  Topical Review: Molecular reaction and solvation visualized by time-resolved X-ray solution scattering: Structure, dynamics, and their solvent dependence.

Authors:  Kyung Hwan Kim; Jeongho Kim; Jae Hyuk Lee; Hyotcherl Ihee
Journal:  Struct Dyn       Date:  2014-02-11       Impact factor: 2.920

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