Literature DB >> 25680981

The amniotic fluid transcriptome as a guide to understanding fetal disease.

Lillian M Zwemer1, Diana W Bianchi1.   

Abstract

Numerous recent studies have shown the power of cell-free fetal RNA, obtained from amniotic fluid supernatant, to report on the development of the living fetus in real time. Examination of these transcripts on a genome-wide basis has led to new insights into the prenatal pathophysiology of multiple genetic, developmental, and environmental diseases. Each studied condition presents a unique, characteristic fetal transcriptome, which points to specific disrupted molecular pathways. These studies have also improved our knowledge of the normal development of the human fetus, revealing gestational age-related dynamic gene expression from a variety of organs. Analysis of the fetal transcriptome in normal and abnormal development has led to novel approaches for in utero prenatal treatment.
Copyright © 2015 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2015        PMID: 25680981      PMCID: PMC4382730          DOI: 10.1101/cshperspect.a023101

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Med        ISSN: 2157-1422            Impact factor:   6.915


  41 in total

1.  [Study of somatic chromosomes from 9 mongoloid children].

Authors:  J LEJEUNE; M GAUTIER; R TURPIN
Journal:  C R Hebd Seances Acad Sci       Date:  1959-03-16

2.  Amniotic fluid RNA gene expression profiling provides insights into the phenotype of Turner syndrome.

Authors:  Lauren J Massingham; Kirby L Johnson; Thomas M Scholl; Donna K Slonim; Heather C Wick; Diana W Bianchi
Journal:  Hum Genet       Date:  2014-05-22       Impact factor: 4.132

3.  Population-based analyses of mortality in trisomy 13 and trisomy 18.

Authors:  Sonja A Rasmussen; Lee-Yang C Wong; Quanhe Yang; Kristin M May; J M Friedman
Journal:  Pediatrics       Date:  2003-04       Impact factor: 7.124

4.  Outcome of twin-twin transfusion diagnosed before 28 weeks of gestation.

Authors:  W Gonsoulin; K J Moise; B Kirshon; D B Cotton; J M Wheeler; R J Carpenter
Journal:  Obstet Gynecol       Date:  1990-02       Impact factor: 7.661

5.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

Review 6.  Prenatal treatment of Down syndrome: a reality?

Authors:  Fayçal Guedj; Diana W Bianchi; Jean-Maurice Delabar
Journal:  Curr Opin Obstet Gynecol       Date:  2014-04       Impact factor: 1.927

Review 7.  Noninvasive prenatal testing creates an opportunity for antenatal treatment of Down syndrome.

Authors:  Faycal Guedj; Diana W Bianchi
Journal:  Prenat Diagn       Date:  2013-06       Impact factor: 3.050

8.  DFLAT: functional annotation for human development.

Authors:  Heather C Wick; Harold Drabkin; Huy Ngu; Michael Sackman; Craig Fournier; Jessica Haggett; Judith A Blake; Diana W Bianchi; Donna K Slonim
Journal:  BMC Bioinformatics       Date:  2014-02-07       Impact factor: 3.169

9.  LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures.

Authors:  Qiaonan Duan; Corey Flynn; Mario Niepel; Marc Hafner; Jeremy L Muhlich; Nicolas F Fernandez; Andrew D Rouillard; Christopher M Tan; Edward Y Chen; Todd R Golub; Peter K Sorger; Aravind Subramanian; Avi Ma'ayan
Journal:  Nucleic Acids Res       Date:  2014-06-06       Impact factor: 16.971

10.  Fetal sex determination using cell-free fetal DNA: service users' experiences of and preferences for service delivery.

Authors:  Celine Lewis; Melissa Hill; Heather Skirton; Lyn S Chitty
Journal:  Prenat Diagn       Date:  2012-05-10       Impact factor: 3.050

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  16 in total

1.  Secrets of life in a spoonful of blood.

Authors:  Claire Ainsworth
Journal:  Nature       Date:  2017-02-07       Impact factor: 49.962

2.  Global transcriptome dysregulation in second trimester fetuses with FMR1 expansions.

Authors:  Lillian M Zwemer; Sarah L Nolin; Patricia M Okamoto; Marcia Eisenberg; Heather C Wick; Diana W Bianchi
Journal:  Prenat Diagn       Date:  2016-10-25       Impact factor: 3.050

3.  RNA-Seq of amniotic fluid cell-free RNA: a discovery phase study of the pathophysiology of congenital cytomegalovirus infection.

Authors:  Lisa Hui; Luc De Catte; Sally Beard; Jovana Maksimovic; Neeta L Vora; Alicia Oshlack; Susan P Walker; Natalie J Hannan
Journal:  Am J Obstet Gynecol       Date:  2022-05-21       Impact factor: 10.693

4.  Amniotic fluid transcriptomics reflects novel disease mechanisms in fetuses with myelomeningocele.

Authors:  Tomo Tarui; Aimee Kim; Alan Flake; Lauren McClain; John D Stratigis; Inbar Fried; Rebecca Newman; Donna K Slonim; Diana W Bianchi
Journal:  Am J Obstet Gynecol       Date:  2017-07-20       Impact factor: 10.693

5.  Comparative Transcriptome Analysis of Cell-Free Fetal RNA from Amniotic Fluid and RNA from Amniocytes in Uncomplicated Pregnancies.

Authors:  J H Kang; H J Park; Y W Jung; S H Shim; S R Sung; J E Park; D H Cha; E H Ahn
Journal:  PLoS One       Date:  2015-07-16       Impact factor: 3.240

6.  microRNA Profiling of Amniotic Fluid: Evidence of Synergy of microRNAs in Fetal Development.

Authors:  Tingting Sun; Weiyun Li; Tianpeng Li; Shucai Ling
Journal:  PLoS One       Date:  2016-05-11       Impact factor: 3.240

7.  A comparison of sample collection methods for quantifying cell-free fetal neurodevelopment transcripts in amniotic fluid.

Authors:  Lisa Hui; Stephen Tong; Tu'Uhevaha J Kaitu'u-Lino; Natalie J Hannan
Journal:  BMC Res Notes       Date:  2016-07-07

Review 8.  Next-generation sequencing and prenatal 'omics: advanced diagnostics and new insights into human development.

Authors:  Neeta L Vora; Lisa Hui
Journal:  Genet Med       Date:  2018-07-22       Impact factor: 8.822

9.  The amniotic fluid cell-free transcriptome in spontaneous preterm labor.

Authors:  Gaurav Bhatti; Roberto Romero; Nardhy Gomez-Lopez; Roger Pique-Regi; Percy Pacora; Eunjung Jung; Lami Yeo; Chaur-Dong Hsu; Mahendra Kavdia; Adi L Tarca
Journal:  Sci Rep       Date:  2021-06-29       Impact factor: 4.996

10.  Systems biology evaluation of cell-free amniotic fluid transcriptome of term and preterm infants to detect fetal maturity.

Authors:  Beena D Kamath-Rayne; Yina Du; Maria Hughes; Erin A Wagner; Louis J Muglia; Emily A DeFranco; Jeffrey A Whitsett; Nathan Salomonis; Yan Xu
Journal:  BMC Med Genomics       Date:  2015-10-22       Impact factor: 3.063

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