Literature DB >> 25679649

Quasispecies theory for evolution of modularity.

Jeong-Man Park1, Liang Ren Niestemski1, Michael W Deem1.   

Abstract

Biological systems are modular, and this modularity evolves over time and in different environments. A number of observations have been made of increased modularity in biological systems under increased environmental pressure. We here develop a quasispecies theory for the dynamics of modularity in populations of these systems. We show how the steady-state fitness in a randomly changing environment can be computed. We derive a fluctuation dissipation relation for the rate of change of modularity and use it to derive a relationship between rate of environmental changes and rate of growth of modularity. We also find a principle of least action for the evolved modularity at steady state. Finally, we compare our predictions to simulations of protein evolution and find them to be consistent.

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Year:  2015        PMID: 25679649      PMCID: PMC4477872          DOI: 10.1103/PhysRevE.91.012714

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  45 in total

1.  Dissociability, modularity, evolvability.

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3.  Hierarchical organization of modularity in metabolic networks.

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5.  Functional modularity of background activities in normal and epileptic brain networks.

Authors:  M Chavez; M Valencia; V Navarro; V Latora; J Martinerie
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6.  Glassy dynamics in the adaptive immune response prevents autoimmune disease.

Authors:  Jun Sun; David J Earl; Michael W Deem
Journal:  Phys Rev Lett       Date:  2005-09-29       Impact factor: 9.161

7.  Error thresholds for molecular quasispecies as phase transitions: From simple landscapes to spin-glass models.

Authors: 
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8.  Systemic risk in banking ecosystems.

Authors:  Andrew G Haldane; Robert M May
Journal:  Nature       Date:  2011-01-20       Impact factor: 49.962

9.  Selection and covariance.

Authors:  G R Price
Journal:  Nature       Date:  1970-08-01       Impact factor: 49.962

10.  Emergent gene order in a model of modular polyketide synthases.

Authors:  Benjamin Callahan; Mukund Thattai; Boris I Shraiman
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-28       Impact factor: 11.205

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  2 in total

1.  Modularity enhances the rate of evolution in a rugged fitness landscape.

Authors:  Jeong-Man Park; Man Chen; Dong Wang; Michael W Deem
Journal:  Phys Biol       Date:  2015-03-19       Impact factor: 2.583

2.  Development of modularity in the neural activity of children's brains.

Authors:  Man Chen; Michael W Deem
Journal:  Phys Biol       Date:  2015-01-26       Impact factor: 2.583

  2 in total

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