Literature DB >> 25786859

Modularity enhances the rate of evolution in a rugged fitness landscape.

Jeong-Man Park1, Man Chen, Dong Wang, Michael W Deem.   

Abstract

Biological systems are modular, and this modularity affects the evolution of biological systems over time and in different environments. We here develop a theory for the dynamics of evolution in a rugged, modular fitness landscape. We show analytically how horizontal gene transfer couples to the modularity in the system and leads to more rapid rates of evolution at short times. The model, in general, analytically demonstrates a selective pressure for the prevalence of modularity in biology. We use this model to show how the evolution of the influenza virus is affected by the modularity of the proteins that are recognized by the human immune system. Approximately 25% of the observed rate of fitness increase of the virus could be ascribed to a modular viral landscape.

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Year:  2015        PMID: 25786859      PMCID: PMC4384690          DOI: 10.1088/1478-3975/12/2/025001

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  21 in total

1.  From molecular to modular cell biology.

Authors:  L H Hartwell; J J Hopfield; S Leibler; A W Murray
Journal:  Nature       Date:  1999-12-02       Impact factor: 49.962

2.  Sequence space localization in the immune system response to vaccination and disease.

Authors:  Michael W Deem; Ha Youn Lee
Journal:  Phys Rev Lett       Date:  2003-08-07       Impact factor: 9.161

3.  Recombination in one- and two-dimensional fitness landscapes.

Authors:  Zh Avetisyan; David B Saakian
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-05-17

4.  Evolutionary advantage via common action of recombination and neutrality.

Authors:  David B Saakian; Chin-Kun Hu
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2013-11-25

5.  Biological evolution in a multidimensional fitness landscape.

Authors:  David B Saakian; Zara Kirakosyan; Chin-Kun Hu
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-09-20

6.  Epistasis as the primary factor in molecular evolution.

Authors:  Michael S Breen; Carsten Kemena; Peter K Vlasov; Cedric Notredame; Fyodor A Kondrashov
Journal:  Nature       Date:  2012-10-14       Impact factor: 49.962

7.  A predictive fitness model for influenza.

Authors:  Marta Luksza; Michael Lässig
Journal:  Nature       Date:  2014-02-26       Impact factor: 49.962

8.  Quasispecies theory for evolution of modularity.

Authors:  Jeong-Man Park; Liang Ren Niestemski; Michael W Deem
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-01-28

9.  Low-dimensional clustering detects incipient dominant influenza strain clusters.

Authors:  Jiankui He; Michael W Deem
Journal:  Protein Eng Des Sel       Date:  2010-10-29       Impact factor: 1.650

10.  Influenza virus reassortment occurs with high frequency in the absence of segment mismatch.

Authors:  Nicolle Marshall; Lalita Priyamvada; Zachary Ende; John Steel; Anice C Lowen
Journal:  PLoS Pathog       Date:  2013-06-13       Impact factor: 6.823

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  1 in total

1.  Modular knowledge systems accelerate human migration in asymmetric random environments.

Authors:  Dong Wang; Michael W Deem
Journal:  J R Soc Interface       Date:  2016-12       Impact factor: 4.118

  1 in total

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