Literature DB >> 25679640

Transcriptional leakage versus noise: a simple mechanism of conversion between binary and graded response in autoregulated genes.

Anna Ochab-Marcinek1, Marcin Tabaka1.   

Abstract

We study the response of an autoregulated gene to a range of concentrations of signal molecules. We show that transcriptional leakage and noise due to translational bursting have the opposite effects. In a positively autoregulated gene, increasing the noise converts the response from graded to binary, while increasing the leakage converts the response from binary to graded. Our findings support the hypothesis that, being a common phenomenon, leaky expression may be a relatively easy way for evolutionary tuning of the type of gene response without changing the type of regulation from positive to negative.

Year:  2015        PMID: 25679640     DOI: 10.1103/PhysRevE.91.012704

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  6 in total

1.  The limiting dynamics of a bistable molecular switch with and without noise.

Authors:  Michael C Mackey; Marta Tyran-Kamińska
Journal:  J Math Biol       Date:  2015-12-21       Impact factor: 2.259

2.  Exponential equilibration of genetic circuits using entropy methods.

Authors:  José A Cañizo; José A Carrillo; Manuel Pájaro
Journal:  J Math Biol       Date:  2018-08-17       Impact factor: 2.259

3.  Gene expression noise is affected differentially by feedback in burst frequency and burst size.

Authors:  Pavol Bokes; Abhyudai Singh
Journal:  J Math Biol       Date:  2016-09-24       Impact factor: 2.259

Review 4.  Stochastic Modeling of Autoregulatory Genetic Feedback Loops: A Review and Comparative Study.

Authors:  James Holehouse; Zhixing Cao; Ramon Grima
Journal:  Biophys J       Date:  2020-02-25       Impact factor: 4.033

5.  Transient hysteresis and inherent stochasticity in gene regulatory networks.

Authors:  M Pájaro; I Otero-Muras; C Vázquez; A A Alonso
Journal:  Nat Commun       Date:  2019-10-08       Impact factor: 14.919

6.  Asymmetry between Activation and Deactivation during a Transcriptional Pulse.

Authors:  Lee S S Dunham; Hiroshi Momiji; Claire V Harper; Polly J Downton; Kirsty Hey; Anne McNamara; Karen Featherstone; David G Spiller; David A Rand; Bärbel Finkenstädt; Michael R H White; Julian R E Davis
Journal:  Cell Syst       Date:  2017-11-15       Impact factor: 10.304

  6 in total

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