Literature DB >> 26692266

The limiting dynamics of a bistable molecular switch with and without noise.

Michael C Mackey1, Marta Tyran-Kamińska2.   

Abstract

We consider the dynamics of a population of organisms containing two mutually inhibitory gene regulatory networks, that can result in a bistable switch-like behaviour. We completely characterize their local and global dynamics in the absence of any noise, and then go on to consider the effects of either noise coming from bursting (transcription or translation), or Gaussian noise in molecular degradation rates when there is a dominant slow variable in the system. We show analytically how the steady state distribution in the population can range from a single unimodal distribution through a bimodal distribution and give the explicit analytic form for the invariant stationary density which is globally asymptotically stable. Rather remarkably, the behaviour of the stationary density with respect to the parameters characterizing the molecular behaviour of the bistable switch is qualitatively identical in the presence of noise coming from bursting as well as in the presence of Gaussian noise in the degradation rate. This implies that one cannot distinguish between either the dominant source or nature of noise based on the stationary molecular distribution in a population of cells. We finally show that the switch model with bursting but two dominant slow genes has an asymptotically stable stationary density.

Keywords:  Bistable switch; Mutual repression; Stochastic modelling

Mesh:

Year:  2015        PMID: 26692266     DOI: 10.1007/s00285-015-0949-1

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  36 in total

1.  How to make a biological switch.

Authors:  J L Cherry; F R Adler
Journal:  J Theor Biol       Date:  2000-03-21       Impact factor: 2.691

2.  Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.

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Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

3.  Genetic regulatory mechanisms in the synthesis of proteins.

Authors:  F JACOB; J MONOD
Journal:  J Mol Biol       Date:  1961-06       Impact factor: 5.469

4.  Reaction coordinates for the flipping of genetic switches.

Authors:  Marco J Morelli; Sorin Tanase-Nicola; Rosalind J Allen; Pieter Rein ten Wolde
Journal:  Biophys J       Date:  2008-01-25       Impact factor: 4.033

5.  Transcriptional bursting diversifies the behaviour of a toggle switch: hybrid simulation of stochastic gene expression.

Authors:  Pavol Bokes; John R King; Andrew T A Wood; Matthew Loose
Journal:  Bull Math Biol       Date:  2013-01-25       Impact factor: 1.758

6.  Mathematics of cellular control processes. I. Negative feedback to one gene.

Authors:  J S Griffith
Journal:  J Theor Biol       Date:  1968-08       Impact factor: 2.691

7.  Designer gene networks: Towards fundamental cellular control.

Authors:  Jeff Hasty; Farren Isaacs; Milos Dolnik; David McMillen; J. J. Collins
Journal:  Chaos       Date:  2001-03       Impact factor: 3.642

8.  Transcriptional pulsing of a developmental gene.

Authors:  Jonathan R Chubb; Tatjana Trcek; Shailesh M Shenoy; Robert H Singer
Journal:  Curr Biol       Date:  2006-05-23       Impact factor: 10.834

9.  A genetic bistable switch utilizing nonlinear protein degradation.

Authors:  Daniel Huang; William J Holtz; Michel M Maharbiz
Journal:  J Biol Eng       Date:  2012-07-09       Impact factor: 4.355

10.  Noise-induced switches in network systems of the genetic toggle switch.

Authors:  Junwei Wang; Jiajun Zhang; Zhanjiang Yuan; Tianshou Zhou
Journal:  BMC Syst Biol       Date:  2007-11-15
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  1 in total

1.  Gene expression noise is affected differentially by feedback in burst frequency and burst size.

Authors:  Pavol Bokes; Abhyudai Singh
Journal:  J Math Biol       Date:  2016-09-24       Impact factor: 2.259

  1 in total

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