Literature DB >> 25670753

Transformation of standardized clinical models based on OWL technologies: from CEM to OpenEHR archetypes.

María del Carmen Legaz-García1, Marcos Menárguez-Tortosa2, Jesualdo Tomás Fernández-Breis2, Christopher G Chute3, Cui Tao4.   

Abstract

INTRODUCTION: The semantic interoperability of electronic healthcare records (EHRs) systems is a major challenge in the medical informatics area. International initiatives pursue the use of semantically interoperable clinical models, and ontologies have frequently been used in semantic interoperability efforts. The objective of this paper is to propose a generic, ontology-based, flexible approach for supporting the automatic transformation of clinical models, which is illustrated for the transformation of Clinical Element Models (CEMs) into openEHR archetypes.
METHODS: Our transformation method exploits the fact that the information models of the most relevant EHR specifications are available in the Web Ontology Language (OWL). The transformation approach is based on defining mappings between those ontological structures. We propose a way in which CEM entities can be transformed into openEHR by using transformation templates and OWL as common representation formalism. The transformation architecture exploits the reasoning and inferencing capabilities of OWL technologies.
RESULTS: We have devised a generic, flexible approach for the transformation of clinical models, implemented for the unidirectional transformation from CEM to openEHR, a series of reusable transformation templates, a proof-of-concept implementation, and a set of openEHR archetypes that validate the methodological approach.
CONCLUSIONS: We have been able to transform CEM into archetypes in an automatic, flexible, reusable transformation approach that could be extended to other clinical model specifications. We exploit the potential of OWL technologies for supporting the transformation process. We believe that our approach could be useful for international efforts in the area of semantic interoperability of EHR systems.
© The Author 2015. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  Clinical Element Model; OWL; archetype; electronic health records; semantic interoperability

Mesh:

Year:  2015        PMID: 25670753      PMCID: PMC5566199          DOI: 10.1093/jamia/ocu027

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  12 in total

1.  A model-driven approach for representing clinical archetypes for Semantic Web environments.

Authors:  Catalina Martínez-Costa; Marcos Menárguez-Tortosa; Jesualdo Tomás Fernández-Breis; José Alberto Maldonado
Journal:  J Biomed Inform       Date:  2008-05-23       Impact factor: 6.317

2.  An analysis framework for electronic health record systems. Interoperation and collaboration in shared healthcare.

Authors:  J Bisbal; D Berry
Journal:  Methods Inf Med       Date:  2009-11-20       Impact factor: 2.176

3.  Clinical data interoperability based on archetype transformation.

Authors:  Catalina Martínez Costa; Marcos Menárguez-Tortosa; Jesualdo Tomás Fernández-Breis
Journal:  J Biomed Inform       Date:  2011-05-27       Impact factor: 6.317

4.  A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data.

Authors:  Cui Tao; Guoqian Jiang; Thomas A Oniki; Robert R Freimuth; Qian Zhu; Deepak Sharma; Jyotishman Pathak; Stanley M Huff; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2012-12-25       Impact factor: 4.497

5.  OWL-based reasoning methods for validating archetypes.

Authors:  Marcos Menárguez-Tortosa; Jesualdo Tomás Fernández-Breis
Journal:  J Biomed Inform       Date:  2012-12-14       Impact factor: 6.317

6.  The next-generation electronic health record: perspectives of key leaders from the US Department of Veterans Affairs.

Authors:  Jason J Saleem; Mindy E Flanagan; Nancy R Wilck; Jim Demetriades; Bradley N Doebbeling
Journal:  J Am Med Inform Assoc       Date:  2013-04-18       Impact factor: 4.497

7.  President's column: interoperability--the 30% solution: from dialog and rhetoric to reality.

Authors:  Kevin M Fickenscher
Journal:  J Am Med Inform Assoc       Date:  2013-05-01       Impact factor: 4.497

8.  An approach for the semantic interoperability of ISO EN 13606 and OpenEHR archetypes.

Authors:  Catalina Martínez-Costa; Marcos Menárguez-Tortosa; Jesualdo Tomás Fernández-Breis
Journal:  J Biomed Inform       Date:  2010-06-01       Impact factor: 6.317

9.  Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: the SHARPn project.

Authors:  Susan Rea; Jyotishman Pathak; Guergana Savova; Thomas A Oniki; Les Westberg; Calvin E Beebe; Cui Tao; Craig G Parker; Peter J Haug; Stanley M Huff; Christopher G Chute
Journal:  J Biomed Inform       Date:  2012-02-04       Impact factor: 6.317

10.  Leveraging electronic healthcare record standards and semantic web technologies for the identification of patient cohorts.

Authors:  Jesualdo Tomás Fernández-Breis; José Alberto Maldonado; Mar Marcos; María del Carmen Legaz-García; David Moner; Joaquín Torres-Sospedra; Angel Esteban-Gil; Begoña Martínez-Salvador; Montserrat Robles
Journal:  J Am Med Inform Assoc       Date:  2013-08-09       Impact factor: 4.497

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  7 in total

1.  A platform for exploration into chaining of web services for clinical data transformation and reasoning.

Authors:  José Alberto Maldonado; Mar Marcos; Jesualdo Tomás Fernández-Breis; Estíbaliz Parcero; Diego Boscá; María Del Carmen Legaz-García; Begoña Martínez-Salvador; Montserrat Robles
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

2.  Clinical Informatics Researcher's Desiderata for the Data Content of the Next Generation Electronic Health Record.

Authors:  Timothy I Kennell; James H Willig; James J Cimino
Journal:  Appl Clin Inform       Date:  2017-12-21       Impact factor: 2.342

3.  S2O - A software tool for integrating research data from general purpose statistic software into electronic data capture systems.

Authors:  Philipp Bruland; Martin Dugas
Journal:  BMC Med Inform Decis Mak       Date:  2017-01-07       Impact factor: 2.796

4.  Design and Construction of a NLP Based Knowledge Extraction Methodology in the Medical Domain Applied to Clinical Information.

Authors:  Denis Cedeño Moreno; Miguel Vargas-Lombardo
Journal:  Healthc Inform Res       Date:  2018-10-31

5.  Generation of open biomedical datasets through ontology-driven transformation and integration processes.

Authors:  María Del Carmen Legaz-García; José Antonio Miñarro-Giménez; Marcos Menárguez-Tortosa; Jesualdo Tomás Fernández-Breis
Journal:  J Biomed Semantics       Date:  2016-06-03

6.  Design of an extensive information representation scheme for clinical narratives.

Authors:  Louise Deléger; Leonardo Campillos; Anne-Laure Ligozat; Aurélie Névéol
Journal:  J Biomed Semantics       Date:  2017-09-11

Review 7.  Semantic interoperability in health records standards: a systematic literature review.

Authors:  Blanda Helena de Mello; Sandro José Rigo; Cristiano André da Costa; Rodrigo da Rosa Righi; Bruna Donida; Marta Rosecler Bez; Luana Carina Schunke
Journal:  Health Technol (Berl)       Date:  2022-01-26
  7 in total

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