| Literature DB >> 35103230 |
Blanda Helena de Mello1, Sandro José Rigo1, Cristiano André da Costa1, Rodrigo da Rosa Righi1, Bruna Donida1, Marta Rosecler Bez1, Luana Carina Schunke1.
Abstract
The integration and exchange of information among health organizations and system providers are currently regarded as a challenge. Each organization usually has an internal ecosystem and a proprietary way to store electronic health records of the patient's history. Recent research explores the advantages of an integrated ecosystem by exchanging information between the different inpatient care actors. Many efforts seek quality in health care, economy, and sustainability in process management. Some examples are reducing medical errors, disease control and monitoring, individualized patient care, and avoiding duplicate and fragmented entries in the electronic medical record. Likewise, some studies showed technologies to achieve this goal effectively and efficiently, with the ability to interoperate data, allowing the interpretation and use of health information. To that end, semantic interoperability aims to share data among all the sectors in the organization, clinicians, nurses, lab, the entire hospital. Therefore, avoiding data silos and keep data regardless of vendors, to exchange the information across organizational boundaries. This study presents a comprehensive systematic literature review of semantic interoperability in electronic health records. We searched seven databases of articles published between 2010 to September 2020. We showed the most chosen scenarios, technologies, and tools employed to solve interoperability problems, and we propose a taxonomy around semantic interoperability in health records. Also, we presented the main approaches to solve the exchange problem of legacy and heterogeneous data across healthcare organizations.Entities:
Keywords: EHR; Health record; Health standard; Semantic interoperability; Systematic review
Year: 2022 PMID: 35103230 PMCID: PMC8791650 DOI: 10.1007/s12553-022-00639-w
Source DB: PubMed Journal: Health Technol (Berl) ISSN: 2190-7196
Research questions to extract information of interest from the articles selected in this review
| Group identifier | Issue |
|---|---|
| GQ1 | What is the state of the art in health standards applied in health records? |
| GQ2 | What are the challenge and open questions to semantic interoperability in health records? |
| SQ1 | What are the health standards adopted in the studies? |
| SQ2 | What are terminologies or health repositories used? |
| SQ3 | What are the approaches used? |
| SQ4 | What are the main security concerns used? |
| SQ5 | What are the evaluation approaches used? |
Follows we shows the quality assessment of article and related questions
| Section | Description | Research Questions |
|---|---|---|
| Title | GQ1, GQ2, SQ1 | |
| Abstract | All questions | |
| Keywords | GQ1, SQ1 | |
| Introduction | All questions | |
| Method | All questions | |
| Results | All questions | |
| Evaluation | All questions | |
| Conclusion | All questions |
Fig. 1This graph presents, distributed by year of publication, the corpus of articles published during the range 2010 to September 2020
Fig. 2The figure presents the entire selection process of the studies across the inclusion/exclusion criteria and quality assessment to conduct this systematic review
Fig. 3This graph presents the articles accepted after the selection process, showing the number of articles by published year
This graph presents the number of papers by year of publication after finishing the selection and filtering steps
| Journal / Conference | H5-index | Amount |
|---|---|---|
| ACM International Conference on Information and Knowledge Management | 54 | 1 |
| BioMed Research International | 97 | 1 |
| BMC Medical Informatics and Decision Making | 41 | 4 |
| BMC Research Notes | 44 | 1 |
| Computer Methods and Programs in Biomedicine | 55 | 2 |
| Future Generation Computer Systems | 86 | 1 |
| Hawaii International Conference on System Sciences | 45 | 1 |
| IEEE Journal of Biomedical and Health Informatics | 69 | 1 |
| International Conference on Autonomous Agents and Multi-Agent Systems | 40 | 1 |
| International Journal of Medical Informatics | 55 | 2 |
| Journal of Biomedical Informatics | 60 | 5 |
| Journal of Medical Internet Research | 96 | 1 |
| Journal of Medical Systems | 58 | 1 |
| Journal of the American Medical Informatics Association | 67 | 4 |
| Knowledge-Based Systems | 85 | 1 |
| Procedia Technology | 34 | 1 |
This table presents the first author and respective studies by year, relating the publisher and the kind of place it was published
| First Author | Ref | Year | Publisher | Type |
|---|---|---|---|---|
| Catalina Martínez-Costa et al. | [ | 2010 | Elsevier | Journal |
| Georg Duftschmid et al. | [ | 2010 | Elsevier | Journal |
| Adel Taweel et al. | [ | 2011 | ACM | Journal |
| Bernard de Bono et al. | [ | 2011 | BioMed Central | Journal |
| Leonardo Lezcano et al. | [ | 2011 | Elsevier | Journal |
| David Mendes et al. | [ | 2012 | Elsevier | Conference |
| Marcos Menárguez-Tortosa et al. | [ | 2012 | Springer | Journal |
| Visara Urovi et al. | [ | 2012 | IFAMAS | Conference |
| Anil Sinaci et al. | [ | 2013 | Elsevier | Journal |
| Arshdeep Bahga et al. | [ | 2013 | IEEE | Journal |
| Carlos Sáez et al. | [ | 2013 | Elsevier | Journal |
| Georg Duftschmid et al. | [ | 2013 | BioMed Central | Journal |
| Jesualdo Tomás Fernández-Breis et al. | [ | 2013 | Oxford Academic | Journal |
| Carlos Marcos et al. | [ | 2015 | Oxford Academic | Journal |
| Catalina Martínez-Costa et al. | [ | 2015 | Oxford Academic | Journal |
| Luis Marco-Ruiz et al. | [ | 2015 | Elsevier | Journal |
| María del Carmen Legaz-García et al. | [ | 2015 | Oxford Academic | Journal |
| Afef Samet Ellouze et al. | [ | 2016 | Elsevier | Journal |
| Hans Demski et al. | [ | 2016 | BioMed Central | Journal |
| María del Carmen Legaz-García et al. | [ | 2016 | Elsevier | Journal |
| Mustafa Yuksel et at | [ | 2016 | Hindawi | Journal |
| Raimundo Lozano-Rubí et al. | [ | 2016 | Elsevier | Journal |
| Lingtong Min et al. | [ | 2018 | BioMed Central | Journal |
| Mário et al. | [ | 2018 | Elsevier | Journal |
| Shellon Blackman | [ | 2018 | IEEE | Conference |
| Spyridon Kalogiannis et al. | [ | 2019 | BioMed Central | Journal |
| Lin Yang et al. | [ | 2019 | JMIR | Journal |
| José Alberto Maldonado et al. | [ | 2020 | Elsevier | Journal |
Health standards used in the selected studies
| Health standard | Reference |
|---|---|
| CEM (Clinical Element Models) | [ |
| DICOM (Digital Imaging and Communications in Medicine) | [ |
| HL7 CCR (Continuity of Care Record) | [ |
| HL7 CDA (Clinical Document Architecture) | [ |
| HL7 CDD (Continuity of Care Document) | [ |
| HL7 HQMF (Health Quality Measure Format) | [ |
| HL7 V2 and V3 | [ |
| HL7 VMR (Virtual Medical Record) | [ |
| IHE (Integrating the Healthcare Enterprise) | [ |
| ISO 13606 | [ |
| Master data standardization and translation (MDST) model | [ |
| openEHR | [ |
http://www.clinicalelement.com/
https://www.dicomstandard.org/current
http://www.hl7.org/implement/standards/
https://www.ihe.net/
http://www.en13606.org/information.html
https://www.openehr.org/
https://ckm.openehr.org/ckm/
The following are the international terminologies and classifications applied by the studies aiming at a shared vocabulary focusing on keeping the real meaning
| Name | Reference |
|---|---|
| ICD-9 (International Classification of Diseases-version 9) | [ |
| ICD-10 (International Classification of Diseases-version 10) | [ |
| SNOMED-CT (SNOMED Clinical Terms) | [ |
| LOINC (Logical Observation Identifiers Names and Codes) | [ |
| MeSH (Medical Subject Headings) | [ |
| MedDRA (Medical Dictionary for Regulatory Activities) | [ |
| WHO-ATC (World Health Organization Anatomical Therapeutic Chemical) | [ |
| ChEBI (Chemical Entities of Biological Interest) | [ |
| FMA (Foundational Model of Anatomy Ontology) | [ |
| BTL2 (BioTopLite2) | [ |
| BioTop | [ |
| Relation Ontology | [ |
| CDE (Common Data Element) | [ |
The studies had more than one objective, so this table separates them into applications and proposed approaches to meet interoperability demands in health records, categorizing them according to the principal approach to developing the contribution
| Approach to develop the contribution | Reference |
|---|---|
| An ontology and rules-based clinical models mapping approach to solving classification/ recommendation problems in Clinical Decision Support System | Rules: [ |
| Ontological: [ | |
| An ontological-based representation (a common mediator among clinical data, terminologies, and clinical models) or semantic web-based | Ontology as mediator: [ |
| Other semantic web tools [ | |
| An ontological-based representation (clinical models and clinical data) | Clinical models: [ |
| Clinical data: [ | |
| Workflow approach as Cloud-based (component-based architecture) or Service-based framework | [ |
| Bayesian network-based approach to retrieve clinical artifacts (archetypes) | [ |
| A collaborative framework to create clinical models by domain experts (less technical information more domain knowledge) | [ |
| Metadata standards-based framework to enrich artifacts with controlled terminologies and semantic labeling | [ |
| XML-based EHR extract framework to represent archetype structure and constraints in XML and XML schema | [ |
| Building automatically interfaces from archetypes by XML representations | [ |
| IHE-based approach jointly agent-based framework – a solution to exchange patient data between the community | [ |
The different semantic web technologies used in studies to solve semantic problems
| Semantic web technologies | Reference |
|---|---|
| LOD (Linked Open Data) | [ |
| OWL (Ontology Web Language) | [ |
| OWL-DL (Ontology Web Language-Description Logic) | [ |
| OWL-S—(Ontology Web Language-Services) | [ |
| RDF (Resource Description Framework) | [ |
| SKOS (Simple Knowledge Organization System) | [ |
| SPARQL (Protocol and RDF Query Language) | [ |
| XQuery script | [ |
| N3 (Notation 3) | [ |
| SWRL (Semantic Web Rule Language) | [ |
Databases used on studies
| Database | Description | Ref |
|---|---|---|
| Virtuoso | Data virtualization platform of knowledge graphs and there is an open-source version. Allows using SQL and SPARQL | [ |
| Neo4J | Native graph database and open source. It is prepared to use Cypher (a graph query language) | [ |
| HBase | It is a Hadoop database, a distributed, scalable, big datastore | [ |
| ARM | A proprietary approach capable of generating relational databases using archetypes and templates for archetype based EHR systems | [ |
| Jena TBD | A component to RDF store and allow query with SPARQL | [ |
| BaseX | High-performance XML database engine and a highly compliant XQuery and open source | [ |
| Oracle | A multi-model database | [ |
| Think!EHR | A big-data, high-performance platform designed to store, manage, query, retrieve and exchange structured electronic health record | [ |
| PostgreSQL | An open-source object-relational database | [ |
https://virtuoso.openlinksw.com/
https://neo4j.com/
https://hbase.apache.org/
https://jena.apache.org/documentation/tdb/
https://basex.org/
https://www.oracle.com/index.html
http://www.marand.com/thinkehr
https://www.postgresql.org/
The Table presents the usually followed guidelines inside academic and controlled environments to use data from the real world
| Privacy concerns | Description | Reference |
|---|---|---|
| Anonymization on safe zone | To use the data, the data provider first anonymized all data in a safe zone inside the health institution | [ |
| User profiles and restrict access levels | According to institution agreement, researchers use the data through restricted user profiles with different access levels | [ |
Follows we list the evaluation approaches and the types of data used in the articles
| Evaluation method or metric | Article |
|---|---|
| Questionnaire (end-user feedback) | [ |
| Questionnaire (specialist feedback) | [ |
| Functional evaluation | [ |
| Case study (applied inside or outside health institution environment) | Outside [ |
| Inside [ | |
| Comparative analyses (traditional data vs novel data) | [ |
| Unitary tests | [ |
| Usability and compatibility across browsers | [ |
Fig. 4Proposed taxonomy for semantic interoperability in health records
Frame 1 This frame shows the search string defined to research.
| “semantic interoperability” AND (“health record” OR “medical record” OR |
| “patient record” OR “hospital record”) AND standard |