Literature DB >> 25650486

X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome.

Feifei Li1, E Sethe Burgie, Tao Yu, Annie Héroux, George C Schatz, Richard D Vierstra, Allen M Orville.   

Abstract

We report that in the red light-absorbing (Pr) state, the bilin chromophore of the Deinococcus radiodurans proteobacterial phytochrome (DrBphP) is hypersensitive to X-ray photons used in typical synchrotron X-ray protein crystallography experiments. This causes the otherwise fully protonated chromophore to deprotonate without additional major structural changes. These results have major implications for our understanding of the structural and chemical characteristics of the resting and intermediate states of phytochromes and other photoreceptor proteins.

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Year:  2015        PMID: 25650486      PMCID: PMC5660918          DOI: 10.1021/ja510923m

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  33 in total

Review 1.  Phytochrome three-dimensional structures and functions.

Authors:  Jon Hughes
Journal:  Biochem Soc Trans       Date:  2010-04       Impact factor: 5.407

2.  A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome.

Authors:  Jeremiah R Wagner; Joseph S Brunzelle; Katrina T Forest; Richard D Vierstra
Journal:  Nature       Date:  2005-11-17       Impact factor: 49.962

3.  Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion.

Authors:  Xiaojing Yang; Emina A Stojkovic; Jane Kuk; Keith Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-17       Impact factor: 11.205

4.  The structure of a complete phytochrome sensory module in the Pr ground state.

Authors:  Lars-Oliver Essen; Jo Mailliet; Jon Hughes
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-17       Impact factor: 11.205

Review 5.  Phytochrome structure and photochemistry: recent advances toward a complete molecular picture.

Authors:  Andrew T Ulijasz; Richard D Vierstra
Journal:  Curr Opin Plant Biol       Date:  2011-07-04       Impact factor: 7.834

6.  Crystallographic and single-crystal spectral analysis of the peroxidase ferryl intermediate.

Authors:  Yergalem T Meharenna; Tzanko Doukov; Huiying Li; S Michael Soltis; Thomas L Poulos
Journal:  Biochemistry       Date:  2010-04-13       Impact factor: 3.162

7.  Synchrotron X-ray-induced photoreduction of ferric myoglobin nitrite crystals gives the ferrous derivative with retention of the O-bonded nitrite ligand.

Authors:  Jun Yi; Allen M Orville; John M Skinner; Michael J Skinner; George B Richter-Addo
Journal:  Biochemistry       Date:  2010-07-27       Impact factor: 3.162

8.  How different oxidation states of crystalline myoglobin are influenced by X-rays.

Authors:  Hans-Petter Hersleth; K Kristoffer Andersson
Journal:  Biochim Biophys Acta       Date:  2010-08-05

Review 9.  The structure of phytochrome: a picture is worth a thousand spectra.

Authors:  Nathan C Rockwell; J Clark Lagarias
Journal:  Plant Cell       Date:  2006-01       Impact factor: 11.277

10.  Signal amplification and transduction in phytochrome photosensors.

Authors:  Heikki Takala; Alexander Björling; Oskar Berntsson; Heli Lehtivuori; Stephan Niebling; Maria Hoernke; Irina Kosheleva; Robert Henning; Andreas Menzel; Janne A Ihalainen; Sebastian Westenhoff
Journal:  Nature       Date:  2014-04-30       Impact factor: 49.962

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  8 in total

1.  Photoreversible interconversion of a phytochrome photosensory module in the crystalline state.

Authors:  E Sethe Burgie; Jonathan A Clinger; Mitchell D Miller; Aaron S Brewster; Pierre Aller; Agata Butryn; Franklin D Fuller; Sheraz Gul; Iris D Young; Cindy C Pham; In-Sik Kim; Asmit Bhowmick; Lee J O'Riordan; Kyle D Sutherlin; Joshua V Heinemann; Alexander Batyuk; Roberto Alonso-Mori; Mark S Hunter; Jason E Koglin; Junko Yano; Vittal K Yachandra; Nicholas K Sauter; Aina E Cohen; Jan Kern; Allen M Orville; George N Phillips; Richard D Vierstra
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-18       Impact factor: 11.205

2.  Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers.

Authors:  Franklin D Fuller; Sheraz Gul; Ruchira Chatterjee; E Sethe Burgie; Iris D Young; Hugo Lebrette; Vivek Srinivas; Aaron S Brewster; Tara Michels-Clark; Jonathan A Clinger; Babak Andi; Mohamed Ibrahim; Ernest Pastor; Casper de Lichtenberg; Rana Hussein; Christopher J Pollock; Miao Zhang; Claudiu A Stan; Thomas Kroll; Thomas Fransson; Clemens Weninger; Markus Kubin; Pierre Aller; Louise Lassalle; Philipp Bräuer; Mitchell D Miller; Muhamed Amin; Sergey Koroidov; Christian G Roessler; Marc Allaire; Raymond G Sierra; Peter T Docker; James M Glownia; Silke Nelson; Jason E Koglin; Diling Zhu; Matthieu Chollet; Sanghoon Song; Henrik Lemke; Mengning Liang; Dimosthenis Sokaras; Roberto Alonso-Mori; Athina Zouni; Johannes Messinger; Uwe Bergmann; Amie K Boal; J Martin Bollinger; Carsten Krebs; Martin Högbom; George N Phillips; Richard D Vierstra; Nicholas K Sauter; Allen M Orville; Jan Kern; Vittal K Yachandra; Junko Yano
Journal:  Nat Methods       Date:  2017-02-27       Impact factor: 28.547

3.  Conserved histidine and tyrosine determine spectral responses through the water network in Deinococcus radiodurans phytochrome.

Authors:  Heli Lehtivuori; Jessica Rumfeldt; Satu Mustalahti; Sami Kurkinen; Heikki Takala
Journal:  Photochem Photobiol Sci       Date:  2022-07-29       Impact factor: 4.328

4.  Acoustic Injectors for Drop-On-Demand Serial Femtosecond Crystallography.

Authors:  Christian G Roessler; Rakhi Agarwal; Marc Allaire; Roberto Alonso-Mori; Babak Andi; José F R Bachega; Martin Bommer; Aaron S Brewster; Michael C Browne; Ruchira Chatterjee; Eunsun Cho; Aina E Cohen; Matthew Cowan; Sammy Datwani; Victor L Davidson; Jim Defever; Brent Eaton; Richard Ellson; Yiping Feng; Lucien P Ghislain; James M Glownia; Guangye Han; Johan Hattne; Julia Hellmich; Annie Héroux; Mohamed Ibrahim; Jan Kern; Anthony Kuczewski; Henrik T Lemke; Pinghua Liu; Lars Majlof; William M McClintock; Stuart Myers; Silke Nelsen; Joe Olechno; Allen M Orville; Nicholas K Sauter; Alexei S Soares; S Michael Soltis; Heng Song; Richard G Stearns; Rosalie Tran; Yingssu Tsai; Monarin Uervirojnangkoorn; Carrie M Wilmot; Vittal Yachandra; Junko Yano; Erik T Yukl; Diling Zhu; Athina Zouni
Journal:  Structure       Date:  2016-03-17       Impact factor: 5.006

5.  Relevance of the Unfolded Protein Response to Spaceflight-Induced Transcriptional Reprogramming in Arabidopsis.

Authors:  Evan Angelos; Dae Kwan Ko; Starla Zemelis-Durfee; Federica Brandizzi
Journal:  Astrobiology       Date:  2020-12-15       Impact factor: 4.335

6.  Choosing the optimal spectroscopic toolkit to understand protein function.

Authors:  Michael A Hough
Journal:  Biosci Rep       Date:  2017-06-08       Impact factor: 3.840

7.  The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography.

Authors:  Petra Edlund; Heikki Takala; Elin Claesson; Léocadie Henry; Robert Dods; Heli Lehtivuori; Matthijs Panman; Kanupriya Pande; Thomas White; Takanori Nakane; Oskar Berntsson; Emil Gustavsson; Petra Båth; Vaibhav Modi; Shatabdi Roy-Chowdhury; James Zook; Peter Berntsen; Suraj Pandey; Ishwor Poudyal; Jason Tenboer; Christopher Kupitz; Anton Barty; Petra Fromme; Jake D Koralek; Tomoyuki Tanaka; John Spence; Mengning Liang; Mark S Hunter; Sebastien Boutet; Eriko Nango; Keith Moffat; Gerrit Groenhof; Janne Ihalainen; Emina A Stojković; Marius Schmidt; Sebastian Westenhoff
Journal:  Sci Rep       Date:  2016-10-19       Impact factor: 4.379

8.  Structural elements regulating the photochromicity in a cyanobacteriochrome.

Authors:  Xiuling Xu; Astrid Port; Christian Wiebeler; Kai-Hong Zhao; Igor Schapiro; Wolfgang Gärtner
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-21       Impact factor: 11.205

  8 in total

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